View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6494_low_15 (Length: 313)

Name: NF6494_low_15
Description: NF6494
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6494_low_15
NF6494_low_15
[»] chr8 (6 HSPs)
chr8 (18-78)||(9311453-9311513)
chr8 (18-78)||(14816998-14817058)
chr8 (18-78)||(14828681-14828741)
chr8 (268-306)||(9311286-9311324)
chr8 (268-306)||(14816831-14816869)
chr8 (268-306)||(14828871-14828909)
[»] chr5 (1 HSPs)
chr5 (18-78)||(19718155-19718215)
[»] chr7 (2 HSPs)
chr7 (18-78)||(45087523-45087583)
chr7 (268-305)||(45087334-45087371)
[»] chr4 (3 HSPs)
chr4 (18-78)||(11039009-11039069)
chr4 (268-306)||(11038842-11038880)
chr4 (268-306)||(12096410-12096448)
[»] chr2 (4 HSPs)
chr2 (18-78)||(7190451-7190511)
chr2 (18-78)||(13810149-13810210)
chr2 (268-308)||(13810339-13810379)
chr2 (268-306)||(7190218-7190256)
[»] chr1 (9 HSPs)
chr1 (18-78)||(2939068-2939128)
chr1 (18-78)||(46015424-46015484)
chr1 (18-78)||(33332911-33332971)
chr1 (268-306)||(2938833-2938871)
chr1 (268-306)||(33333161-33333199)
chr1 (269-306)||(46015614-46015651)
chr1 (148-178)||(2938971-2939001)
chr1 (148-178)||(33333038-33333068)
chr1 (268-300)||(48221719-48221751)
[»] scaffold0029 (2 HSPs)
scaffold0029 (18-78)||(71338-71398)
scaffold0029 (268-306)||(71585-71623)
[»] chr6 (1 HSPs)
chr6 (21-78)||(269814-269871)
[»] chr3 (1 HSPs)
chr3 (268-308)||(39992249-39992289)
[»] scaffold0042 (1 HSPs)
scaffold0042 (268-303)||(91006-91041)


Alignment Details
Target: chr8 (Bit Score: 53; Significance: 2e-21; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 18 - 78
Target Start/End: Complemental strand, 9311513 - 9311453
Alignment:
Q  18 tggttttgaataatatgaaagaaagtttgaaaatttaagattattgtgaaatgggtctgaa 78  Q
    ||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||    
T  9311513 tggttttgaataatatgaaagaaagtttgaaaatttgggattattgtgaaatgggtctgaa 9311453  T

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Target: chr8; HSP #2
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 18 - 78
Target Start/End: Complemental strand, 14817058 - 14816998
Alignment:
Q  18 tggttttgaataatatgaaagaaagtttgaaaatttaagattattgtgaaatgggtctgaa 78  Q
    ||||||||||||||||||||||||||||||||| ||  |||||||||||||||||||||||    
T  14817058 tggttttgaataatatgaaagaaagtttgaaaaattgggattattgtgaaatgggtctgaa 14816998  T

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Target: chr8; HSP #3
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 18 - 78
Target Start/End: Original strand, 14828681 - 14828741
Alignment:
Q  18 tggttttgaataatatgaaagaaagtttgaaaatttaagattattgtgaaatgggtctgaa 78  Q
    ||||||||||||||||||||||||||||||||| ||  |||||||||||||||||||||||    
T  14828681 tggttttgaataatatgaaagaaagtttgaaaaattgggattattgtgaaatgggtctgaa 14828741  T

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Target: chr8; HSP #4
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 268 - 306
Target Start/End: Complemental strand, 9311324 - 9311286
Alignment:
Q  268 atgagaggatttatgggttacttcatgatgatgatgatg 306  Q
    |||||||||||||||||||||||||||||||||||||||    
T  9311324 atgagaggatttatgggttacttcatgatgatgatgatg 9311286  T

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Target: chr8; HSP #5
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 268 - 306
Target Start/End: Complemental strand, 14816869 - 14816831
Alignment:
Q  268 atgagaggatttatgggttacttcatgatgatgatgatg 306  Q
    |||||||||||||||||||||||||||||||||||||||    
T  14816869 atgagaggatttatgggttacttcatgatgatgatgatg 14816831  T

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Target: chr8; HSP #6
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 268 - 306
Target Start/End: Original strand, 14828871 - 14828909
Alignment:
Q  268 atgagaggatttatgggttacttcatgatgatgatgatg 306  Q
    |||||||||||||||||||||||||||||||||||||||    
T  14828871 atgagaggatttatgggttacttcatgatgatgatgatg 14828909  T

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Target: chr5 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 18 - 78
Target Start/End: Complemental strand, 19718215 - 19718155
Alignment:
Q  18 tggttttgaataatatgaaagaaagtttgaaaatttaagattattgtgaaatgggtctgaa 78  Q
    ||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||    
T  19718215 tggttttgaataatatgaaagaaagtttgaaaatttgggattattgtgaaatgggtctgaa 19718155  T

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Target: chr7 (Bit Score: 49; Significance: 5e-19; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 18 - 78
Target Start/End: Complemental strand, 45087583 - 45087523
Alignment:
Q  18 tggttttgaataatatgaaagaaagtttgaaaatttaagattattgtgaaatgggtctgaa 78  Q
    |||||||||||||||||||||||||||| |||||||  |||||||||||||||||||||||    
T  45087583 tggttttgaataatatgaaagaaagtttaaaaatttgggattattgtgaaatgggtctgaa 45087523  T

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Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 268 - 305
Target Start/End: Complemental strand, 45087371 - 45087334
Alignment:
Q  268 atgagaggatttatgggttacttcatgatgatgatgat 305  Q
    ||||||||||||||||||||||||||||||||||||||    
T  45087371 atgagaggatttatgggttacttcatgatgatgatgat 45087334  T

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Target: chr4 (Bit Score: 49; Significance: 5e-19; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 18 - 78
Target Start/End: Complemental strand, 11039069 - 11039009
Alignment:
Q  18 tggttttgaataatatgaaagaaagtttgaaaatttaagattattgtgaaatgggtctgaa 78  Q
    ||||||||||||||||||||||||||||||||||||  |||||||||||||||||| ||||    
T  11039069 tggttttgaataatatgaaagaaagtttgaaaatttgggattattgtgaaatgggtttgaa 11039009  T

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Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 268 - 306
Target Start/End: Complemental strand, 11038880 - 11038842
Alignment:
Q  268 atgagaggatttatgggttacttcatgatgatgatgatg 306  Q
    |||||||| ||||||||||||||||||||||||||||||    
T  11038880 atgagagggtttatgggttacttcatgatgatgatgatg 11038842  T

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Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 268 - 306
Target Start/End: Original strand, 12096410 - 12096448
Alignment:
Q  268 atgagaggatttatgggttacttcatgatgatgatgatg 306  Q
    |||||||||||||||||||| ||||||||||||||||||    
T  12096410 atgagaggatttatgggttaattcatgatgatgatgatg 12096448  T

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Target: chr2 (Bit Score: 49; Significance: 5e-19; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 18 - 78
Target Start/End: Complemental strand, 7190511 - 7190451
Alignment:
Q  18 tggttttgaataatatgaaagaaagtttgaaaatttaagattattgtgaaatgggtctgaa 78  Q
    ||||||||||||||||||||||||||||||||||||  |||||||||||||||||| ||||    
T  7190511 tggttttgaataatatgaaagaaagtttgaaaatttgggattattgtgaaatgggtttgaa 7190451  T

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Target: chr2; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 18 - 78
Target Start/End: Original strand, 13810149 - 13810210
Alignment:
Q  18 tggttttgaataatatgaaagaaagttt-gaaaatttaagattattgtgaaatgggtctgaa 78  Q
    |||||||||||||||||||||||||||| ||||||||  |||||||||||||||||||||||    
T  13810149 tggttttgaataatatgaaagaaagtttagaaaatttgggattattgtgaaatgggtctgaa 13810210  T

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Target: chr2; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 268 - 308
Target Start/End: Original strand, 13810339 - 13810379
Alignment:
Q  268 atgagaggatttatgggttacttcatgatgatgatgatgtc 308  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  13810339 atgagaggatttatgggttacttcatgatgatgatgatgtc 13810379  T

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Target: chr2; HSP #4
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 268 - 306
Target Start/End: Complemental strand, 7190256 - 7190218
Alignment:
Q  268 atgagaggatttatgggttacttcatgatgatgatgatg 306  Q
    |||||||||||||||||||||||||||||||||||||||    
T  7190256 atgagaggatttatgggttacttcatgatgatgatgatg 7190218  T

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Target: chr1 (Bit Score: 49; Significance: 5e-19; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 18 - 78
Target Start/End: Complemental strand, 2939128 - 2939068
Alignment:
Q  18 tggttttgaataatatgaaagaaagtttgaaaatttaagattattgtgaaatgggtctgaa 78  Q
    ||||||||||||||||||||||||||||||||||||  ||||||||| |||||||||||||    
T  2939128 tggttttgaataatatgaaagaaagtttgaaaatttgggattattgttaaatgggtctgaa 2939068  T

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Target: chr1; HSP #2
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 18 - 78
Target Start/End: Original strand, 46015424 - 46015484
Alignment:
Q  18 tggttttgaataatatgaaagaaagtttgaaaatttaagattattgtgaaatgggtctgaa 78  Q
    ||||||||||||||||||||||||||||||||||||   ||||||||||||||||||||||    
T  46015424 tggttttgaataatatgaaagaaagtttgaaaatttggaattattgtgaaatgggtctgaa 46015484  T

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Target: chr1; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 18 - 78
Target Start/End: Original strand, 33332911 - 33332971
Alignment:
Q  18 tggttttgaataatatgaaagaaagtttgaaaatttaagattattgtgaaatgggtctgaa 78  Q
    |||||||||||||||||||||||||||||||| |||  |||||||||||||||| ||||||    
T  33332911 tggttttgaataatatgaaagaaagtttgaaagtttgggattattgtgaaatggatctgaa 33332971  T

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Target: chr1; HSP #4
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 268 - 306
Target Start/End: Complemental strand, 2938871 - 2938833
Alignment:
Q  268 atgagaggatttatgggttacttcatgatgatgatgatg 306  Q
    |||||||||||||||||||||||||||||||||||||||    
T  2938871 atgagaggatttatgggttacttcatgatgatgatgatg 2938833  T

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Target: chr1; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 268 - 306
Target Start/End: Original strand, 33333161 - 33333199
Alignment:
Q  268 atgagaggatttatgggttacttcatgatgatgatgatg 306  Q
    |||||| ||||||||||||||||||||||||||||||||    
T  33333161 atgagaagatttatgggttacttcatgatgatgatgatg 33333199  T

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Target: chr1; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 269 - 306
Target Start/End: Original strand, 46015614 - 46015651
Alignment:
Q  269 tgagaggatttatgggttacttcatgatgatgatgatg 306  Q
    ||||||||||||||||||||||||||||||| ||||||    
T  46015614 tgagaggatttatgggttacttcatgatgataatgatg 46015651  T

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Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 148 - 178
Target Start/End: Complemental strand, 2939001 - 2938971
Alignment:
Q  148 atgggttatttcatgaggatgaagatgtttt 178  Q
    |||||||||||||||||||||||||||||||    
T  2939001 atgggttatttcatgaggatgaagatgtttt 2938971  T

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Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 148 - 178
Target Start/End: Original strand, 33333038 - 33333068
Alignment:
Q  148 atgggttatttcatgaggatgaagatgtttt 178  Q
    |||||||||||||||||||||||||||||||    
T  33333038 atgggttatttcatgaggatgaagatgtttt 33333068  T

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Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 268 - 300
Target Start/End: Complemental strand, 48221751 - 48221719
Alignment:
Q  268 atgagaggatttatgggttacttcatgatgatg 300  Q
    |||||| ||||||||||||||||||||||||||    
T  48221751 atgagaagatttatgggttacttcatgatgatg 48221719  T

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Target: scaffold0029 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 2)
Name: scaffold0029
Description:

Target: scaffold0029; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 18 - 78
Target Start/End: Original strand, 71338 - 71398
Alignment:
Q  18 tggttttgaataatatgaaagaaagtttgaaaatttaagattattgtgaaatgggtctgaa 78  Q
    |||||||||||| ||||||||||||||  |||||||| ||||||||||||| |||||||||    
T  71338 tggttttgaatagtatgaaagaaagttgaaaaatttaggattattgtgaaaagggtctgaa 71398  T

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Target: scaffold0029; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 268 - 306
Target Start/End: Original strand, 71585 - 71623
Alignment:
Q  268 atgagaggatttatgggttacttcatgatgatgatgatg 306  Q
    |||||||||||||||||||||||||||||||||||||||    
T  71585 atgagaggatttatgggttacttcatgatgatgatgatg 71623  T

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Target: chr6 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 21 - 78
Target Start/End: Original strand, 269814 - 269871
Alignment:
Q  21 ttttgaataatatgaaagaaagtttgaaaatttaagattattgtgaaatgggtctgaa 78  Q
    ||||||||| |||||||||||||||||||||||  | |||||||||| ||||||||||    
T  269814 ttttgaatactatgaaagaaagtttgaaaatttggggttattgtgaagtgggtctgaa 269871  T

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Target: chr3 (Bit Score: 37; Significance: 0.000000000007; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 268 - 308
Target Start/End: Original strand, 39992249 - 39992289
Alignment:
Q  268 atgagaggatttatgggttacttcatgatgatgatgatgtc 308  Q
    ||||||||||||||||||||||||||||||| |||||||||    
T  39992249 atgagaggatttatgggttacttcatgatgacgatgatgtc 39992289  T

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Target: scaffold0042 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: scaffold0042
Description:

Target: scaffold0042; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 268 - 303
Target Start/End: Original strand, 91006 - 91041
Alignment:
Q  268 atgagaggatttatgggttacttcatgatgatgatg 303  Q
    |||||| |||||||||||||||||||||||||||||    
T  91006 atgagaagatttatgggttacttcatgatgatgatg 91041  T

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