View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6494_low_2 (Length: 707)
Name: NF6494_low_2
Description: NF6494
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6494_low_2 |
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Alignment Details
Target: chr7 (Bit Score: 550; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 550; E-Value: 0
Query Start/End: Original strand, 18 - 700
Target Start/End: Complemental strand, 37965415 - 37964722
Alignment:
| Q |
18 |
cttgaagcttctcagaaactctgtggaattgggttaagaacgaaaagaattttgggtttgaagaacattgatgtatatgcttttggtatgttacttcact |
117 |
Q |
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| T |
37965415 |
cttgaagcttctcagaaactctgtggaattgggttaagaacgaaaagaattttgggtttgaagaacattgatgtatatgcttttggtatgttacttcact |
37965316 |
T |
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| Q |
118 |
tttattctgcatggcaaaaattagtgatagctaact---------------------tttctaattgctttgatagtgctatgttgactgtgaaaaattc |
196 |
Q |
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| T |
37965315 |
tttattctgcatggcaaaaactagtgatagctaactgattcaatttgtttgataacttttctaattgctttgatagtgctatgttgactgtgaaaaattc |
37965216 |
T |
|
| Q |
197 |
aannnnnnnggaaggtgtttatgctgacgatgatgacgtaaagagatgtctgtctgagaaatatggcaaattttctccgtctgaattgaagggaaacaag |
296 |
Q |
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| T |
37965215 |
aatttttttggaaggtgtttatgctgacgatgatgacgtaaagagatgtctgtctgagaaatatggcaaattttctccgtctgaattgaagggaaacaag |
37965116 |
T |
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| Q |
297 |
gagtttaatgaggatctactggaaaatgatatacatttaacagtaaggcttcaaattgtttatagtagattgagcattcgttctgtgaggagtgcatttg |
396 |
Q |
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| T |
37965115 |
gagtttaatgaggatctactggaaaatgatatacatttaacagtaaggcttcaaattgtttatagtagattgagcattcgttctgtgaggagtgcatttg |
37965016 |
T |
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| Q |
397 |
aagagtctgttggaagcagattgcaaaaatatgggggatcagataataaacaattacttcagaggtgaaatggtttcttcagcttcagttatctttttca |
496 |
Q |
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| T |
37965015 |
aagattctgttggaagcagattgcaaaaatatgggggatcagataataaacaattacttcagaggtgaaatggtttcttcagcttcagttatc------- |
37964923 |
T |
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| Q |
497 |
ttggttcagaattacttgtgtagaacttgtt-gaacaataagcacttatgtttatatcactataacactctagaattctctttaagttgtcctttgtttg |
595 |
Q |
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| T |
37964922 |
----ttgagaattacttgtgtagaacttgttagaacaataagcacatatgtttatatcactataacactctagaattctctttaagttgtcctttgtttg |
37964827 |
T |
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| Q |
596 |
tatctttttctgctttaaaaaattaaaagcattttataattgttactagtatcttagatctcataaacctttgaaaactgtattccatgtgtttattcat |
695 |
Q |
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| T |
37964826 |
tatctttttctgctttaaaaaattaaaagcattttataattgttactagtatcttagatctcataaacctttgaaaactgtattccatgtgtttattcat |
37964727 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 75; Significance: 4e-34; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 75; E-Value: 4e-34
Query Start/End: Original strand, 371 - 497
Target Start/End: Original strand, 12628455 - 12628579
Alignment:
| Q |
371 |
cattcgttctgtgaggagtgcatttgaagagtctgttggaagcagattgcaaaaatatgggggatcagataataaacaattacttcagaggtgaaatggt |
470 |
Q |
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|||| ||||| |||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||| |||| |||||||||||||||| | |
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| T |
12628455 |
catttgttctttgaggagtgcatttgaagagtctgatggaagcagattgcaaaaatat-ggggatcagataataaagaattgcttcagaggtgaaatgat |
12628553 |
T |
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| Q |
471 |
ttcttcagcttcagttatctttttcat |
497 |
Q |
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| T |
12628554 |
atcttcaacttga-ttatctttttcat |
12628579 |
T |
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