View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6494_low_24 (Length: 220)

Name: NF6494_low_24
Description: NF6494
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6494_low_24
NF6494_low_24
[»] scaffold0133 (2 HSPs)
scaffold0133 (10-191)||(8534-8715)
scaffold0133 (10-190)||(12876-13056)
[»] chr6 (11 HSPs)
chr6 (47-190)||(16658073-16658216)
chr6 (10-190)||(16797196-16797373)
chr6 (47-188)||(16867959-16868100)
chr6 (14-190)||(16787998-16788174)
chr6 (10-190)||(17069533-17069713)
chr6 (11-190)||(16987482-16987661)
chr6 (47-190)||(16837741-16837884)
chr6 (10-190)||(18806144-18806330)
chr6 (10-190)||(18873138-18873324)
chr6 (81-190)||(16843925-16844040)
chr6 (47-107)||(16781163-16781223)
[»] scaffold0144 (1 HSPs)
scaffold0144 (47-190)||(37551-37694)
[»] scaffold0511 (1 HSPs)
scaffold0511 (10-183)||(9380-9559)
[»] scaffold0230 (1 HSPs)
scaffold0230 (10-183)||(4700-4879)
[»] chr8 (1 HSPs)
chr8 (47-190)||(13378155-13378304)
[»] chr3 (2 HSPs)
chr3 (47-107)||(7053303-7053363)
chr3 (47-107)||(38939396-38939456)
[»] scaffold0256 (1 HSPs)
scaffold0256 (47-107)||(9208-9268)


Alignment Details
Target: scaffold0133 (Bit Score: 178; Significance: 4e-96; HSPs: 2)
Name: scaffold0133
Description:

Target: scaffold0133; HSP #1
Raw Score: 178; E-Value: 4e-96
Query Start/End: Original strand, 10 - 191
Target Start/End: Original strand, 8534 - 8715
Alignment:
10 catcatcagataagcttgctaaatgatgagcatcagaagttcccatgatggatgcaacaatgtcaagtctggtagtgatcaaaattgatgcacctttctt 109  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
8534 catcatcagataagcttgctaaatgatgagcatcagaagttcccatgatggatgcaacaatgtcaagtctggtagtgatcaaaattgatgcacctttctt 8633  T
110 tccattttgcaacaaagactttaacttattccatttctctttgtcttcagtccacacatcatcaagaacaagtaaataccta 191  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
8634 tccatttagcaacaaagactttaacttattccatttctctttgtcttcagtccacacatcatcaagaacaagtaaataccta 8715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0133; HSP #2
Raw Score: 153; E-Value: 3e-81
Query Start/End: Original strand, 10 - 190
Target Start/End: Original strand, 12876 - 13056
Alignment:
10 catcatcagataagcttgctaaatgatgagcatcagaagttcccatgatggatgcaacaatgtcaagtctggtagtgatcaaaattgatgcacctttctt 109  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
12876 catcatcagataagcttgctaaatgatgagcatcagaagttcccatgatggatgcaacaatgtcaagtctggtagtgaccaaaattgatgcacctttctt 12975  T
110 tccattttgcaacaaagactttaacttattccatttctctttgtcttcagtccacacatcatcaagaacaagtaaatacct 190  Q
    ||||| ||||||| ||||||| ||||||||||||||||||| ||||||| |||||||||||||||||||||| ||||||||    
12976 tccatgttgcaacgaagacttgaacttattccatttctcttggtcttcactccacacatcatcaagaacaagcaaatacct 13056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 112; Significance: 9e-57; HSPs: 11)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 112; E-Value: 9e-57
Query Start/End: Original strand, 47 - 190
Target Start/End: Original strand, 16658073 - 16658216
Alignment:
47 agttcccatgatggatgcaacaatgtcaagtctggtagtgatcaaaattgatgcacctttctttccattttgcaacaaagactttaacttattccatttc 146  Q
    |||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||  |||||||||||||||||||||||||||||||    
16658073 agttcccatgatggatgcaacaatctcaagtctggtagtgaccaaaattgatgcacctttctttccaagttgcaacaaagactttaacttattccatttc 16658172  T
147 tctttgtcttcagtccacacatcatcaagaacaagtaaatacct 190  Q
    |||| ||||||| |||| ||||||||||||||||| ||||||||    
16658173 tcttggtcttcactccaaacatcatcaagaacaagcaaatacct 16658216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 111; E-Value: 3e-56
Query Start/End: Original strand, 10 - 190
Target Start/End: Original strand, 16797196 - 16797373
Alignment:
10 catcatcagataagcttgctaaatgatgagcatcagaagttcccatgatggatgcaacaatgtcaagtctggtagtgatcaaaattgatgcacctttctt 109  Q
    ||||||||||||| | || |||||||||| |||   |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
16797196 catcatcagataaccgtgttaaatgatgaacat---aagttcccatgatggatgcaacaatgtcaagtctggtagtgaccaaaattgatgcacctttctt 16797292  T
110 tccattttgcaacaaagactttaacttattccatttctctttgtcttcagtccacacatcatcaagaacaagtaaatacct 190  Q
    ||||||| ||||||| ||||| ||| ||||||||||| ||| ||| ||| |||||||||||||||||||||| ||||||||    
16797293 tccatttggcaacaatgacttgaacgtattccatttcacttggtcatcactccacacatcatcaagaacaagcaaatacct 16797373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 110; E-Value: 1e-55
Query Start/End: Original strand, 47 - 188
Target Start/End: Complemental strand, 16868100 - 16867959
Alignment:
47 agttcccatgatggatgcaacaatgtcaagtctggtagtgatcaaaattgatgcacctttctttccattttgcaacaaagactttaacttattccatttc 146  Q
    |||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||  |||||||||||||||||||||||||||||||    
16868100 agttcccatgatggatgcaacaatctcaagtctggtagtgaccaaaattgatgcacctttctttccaagttgcaacaaagactttaacttattccatttc 16868001  T
147 tctttgtcttcagtccacacatcatcaagaacaagtaaatac 188  Q
    |||| ||||||| |||| ||||||||||||||||| ||||||    
16868000 tcttggtcttcactccaaacatcatcaagaacaagcaaatac 16867959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 109; E-Value: 5e-55
Query Start/End: Original strand, 14 - 190
Target Start/End: Original strand, 16787998 - 16788174
Alignment:
14 atcagataagcttgctaaatgatgagcatcagaagttcccatgatggatgcaacaatgtcaagtctggtagtgatcaaaattgatgcacctttctttcca 113  Q
    ||||||||||| || |||| ||||||||| | ||||| |||||||||||||||||||||||||||  | ||||| ||||||||||||||||||| || ||    
16787998 atcagataagcgtgttaaacgatgagcatgataagttgccatgatggatgcaacaatgtcaagtcgtgcagtgaccaaaattgatgcacctttcgtttca 16788097  T
114 ttttgcaacaaagactttaacttattccatttctctttgtcttcagtccacacatcatcaagaacaagtaaatacct 190  Q
    | ||||||||||||||| ||||||||||||||||||| ||||||| |||||||||||||||||||||||| ||||||    
16788098 tattgcaacaaagacttgaacttattccatttctcttggtcttcattccacacatcatcaagaacaagtagatacct 16788174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 109; E-Value: 5e-55
Query Start/End: Original strand, 10 - 190
Target Start/End: Original strand, 17069533 - 17069713
Alignment:
10 catcatcagataagcttgctaaatgatgagcatcagaagttcccatgatggatgcaacaatgtcaagtctggtagtgatcaaaattgatgcacctttctt 109  Q
    ||||||||||||| | || |||| |||||||||||  |||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||    
17069533 catcatcagataaccgtgataaaggatgagcatcatgagttcccatgatggatgcaacaatgtcaagtctggtagtgactaaaattgatgcacctttctt 17069632  T
110 tccattttgcaacaaagactttaacttattccatttctctttgtcttcagtccacacatcatcaagaacaagtaaatacct 190  Q
    ||||||| | ||||||||||| ||  ||||||||||| ||| ||| ||| |||||||||||||||||||||| ||||||||    
17069633 tccatttggtaacaaagacttgaagctattccatttcacttggtcatcactccacacatcatcaagaacaagcaaatacct 17069713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 11 - 190
Target Start/End: Original strand, 16987482 - 16987661
Alignment:
11 atcatcagataagcttgctaaatgatgagcatcagaagttcccatgatggatgcaacaatgtcaagtctggtagtgatcaaaattgatgcacctttcttt 110  Q
    ||||||||||||||   | ||| ||||||||  | ||||||||||||||||||||||| ||||||||||||| |||| ||||| ||||||||||||| ||    
16987482 atcatcagataagccgaccaaaggatgagcaggataagttcccatgatggatgcaacattgtcaagtctggtggtgaccaaaactgatgcacctttcgtt 16987581  T
111 ccattttgcaacaaagactttaacttattccatttctctttgtcttcagtccacacatcatcaagaacaagtaaatacct 190  Q
    | ||||||||||| |||||| ||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||    
16987582 ctattttgcaacacagacttgaacttattccatttctctcggtcttcagtccacacatcatcaagaacaagtaaatacct 16987661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 104; E-Value: 5e-52
Query Start/End: Original strand, 47 - 190
Target Start/End: Original strand, 16837741 - 16837884
Alignment:
47 agttcccatgatggatgcaacaatgtcaagtctggtagtgatcaaaattgatgcacctttctttccattttgcaacaaagactttaacttattccatttc 146  Q
    |||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||| ||| |||||||||||    
16837741 agttcccatgatggatgcaacaatctcaagtctggtagtgaccaaaattgatgcacctttctttccatttggcaacaaagacttgaacgtattccatttc 16837840  T
147 tctttgtcttcagtccacacatcatcaagaacaagtaaatacct 190  Q
     ||| ||| ||| |||||||||||||||||||||| ||||||||    
16837841 acttggtcatcactccacacatcatcaagaacaagcaaatacct 16837884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 84; E-Value: 4e-40
Query Start/End: Original strand, 10 - 190
Target Start/End: Complemental strand, 18806330 - 18806144
Alignment:
10 catcatcagataagcttgctaaatgatgagcatcagaagttcccatgatggatgcaacaatgtcaagtctggtagtgatcaaaattgatgcacctttc-- 107  Q
    ||||||||||||||| |   ||||||||||||  | ||||||||||||| ||||||||||||||||||||||| |||| |||||||||||||||||||      
18806330 catcatcagataagcctaacaaatgatgagcaggataagttcccatgattgatgcaacaatgtcaagtctggttgtgaccaaaattgatgcacctttcgt 18806231  T
108 ----tttccattttgcaacaaagactttaacttattccatttctctttgtcttcagtccacacatcatcaagaacaagtaaatacct 190  Q
        ||||||  |||||  ||| |||| |||| |||||||||||||| ||||||| |||||||||||||||||||||||| ||||||    
18806230 gccatttccacgttgcagaaaatacttgaactgattccatttctcttggtcttcattccacacatcatcaagaacaagtagatacct 18806144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 10 - 190
Target Start/End: Complemental strand, 18873324 - 18873138
Alignment:
10 catcatcagataagcttgctaaatgatgagcatcagaagttcccatgatggatgcaacaatgtcaagtctggtagtgatcaaaattgatgcacctttc-- 107  Q
    ||||||||||||||| |   ||||||||||||  | ||||||||||||| ||||||||||||||||||||||| |||| ||||| |||||||||||||      
18873324 catcatcagataagcctaacaaatgatgagcaggataagttcccatgattgatgcaacaatgtcaagtctggttgtgaccaaaactgatgcacctttcgt 18873225  T
108 ----tttccattttgcaacaaagactttaacttattccatttctctttgtcttcagtccacacatcatcaagaacaagtaaatacct 190  Q
        ||||||  |||||  ||| |||| |||| |||||||||||||| ||||||| |||||||||||||||||||||||| ||||||    
18873224 gccatttccacgttgcagaaaatacttgaactgattccatttctcttggtcttcattccacacatcatcaagaacaagtagatacct 18873138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 81 - 190
Target Start/End: Original strand, 16843925 - 16844040
Alignment:
81 gtagtgatcaaaattgatgcacctttctttccattt------tgcaacaaagactttaacttattccatttctctttgtcttcagtccacacatcatcaa 174  Q
    ||||||| ||||| ||||||||||||  ||||||||      ||||| |||||| | ||||||| |||||| | || ||||||| |||| ||||| ||||    
16843925 gtagtgaccaaaactgatgcaccttttgttccatttccacattgcaaaaaagacatgaacttatcccatttatgttggtcttcattccaaacatcgtcaa 16844024  T
175 gaacaagtaaatacct 190  Q
    | ||||||||||||||    
16844025 ggacaagtaaatacct 16844040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 47 - 107
Target Start/End: Original strand, 16781163 - 16781223
Alignment:
47 agttcccatgatggatgcaacaatgtcaagtctggtagtgatcaaaattgatgcacctttc 107  Q
    |||||||||||||||||||||||| |||||||  || ||||  ||||| |||| |||||||    
16781163 agttcccatgatggatgcaacaatatcaagtcgtgttgtgactaaaatagatgaacctttc 16781223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0144 (Bit Score: 104; Significance: 5e-52; HSPs: 1)
Name: scaffold0144
Description:

Target: scaffold0144; HSP #1
Raw Score: 104; E-Value: 5e-52
Query Start/End: Original strand, 47 - 190
Target Start/End: Original strand, 37551 - 37694
Alignment:
47 agttcccatgatggatgcaacaatgtcaagtctggtagtgatcaaaattgatgcacctttctttccattttgcaacaaagactttaacttattccatttc 146  Q
    |||||||||||||||||||||||| | |||||||||||||| ||| |||||||||||||||||||||  |||||||||||||||||||||||||||||||    
37551 agttcccatgatggatgcaacaatctgaagtctggtagtgaccaatattgatgcacctttctttccaagttgcaacaaagactttaacttattccatttc 37650  T
147 tctttgtcttcagtccacacatcatcaagaacaagtaaatacct 190  Q
    |||| ||||||| |||| ||||||||||||||||| ||||||||    
37651 tcttggtcttcactccaaacatcatcaagaacaagcaaatacct 37694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0511 (Bit Score: 77; Significance: 7e-36; HSPs: 1)
Name: scaffold0511
Description:

Target: scaffold0511; HSP #1
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 10 - 183
Target Start/End: Original strand, 9380 - 9559
Alignment:
10 catcatcagataagcttgctaaatgatgagcatcagaagttcccatgatggatgcaacaatgtcaagtctggtagtgatcaaaattgatgcacctttc-- 107  Q
    ||||||||||||||| |   ||||||||||||  | ||||||||||||| ||||||||||||||||||||||| |||| ||||| |||||||||||||      
9380 catcatcagataagcctaacaaatgatgagcaggataagttcccatgattgatgcaacaatgtcaagtctggttgtgaccaaaactgatgcacctttcgt 9479  T
108 ----tttccattttgcaacaaagactttaacttattccatttctctttgtcttcagtccacacatcatcaagaacaagta 183  Q
        ||||||  |||||  ||| |||| |||| |||||||||||||| ||||||| ||||||||||||||||||||||||    
9480 gccatttccacgttgcagaaaatacttgaactgattccatttctcttggtcttcaatccacacatcatcaagaacaagta 9559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0230 (Bit Score: 77; Significance: 7e-36; HSPs: 1)
Name: scaffold0230
Description:

Target: scaffold0230; HSP #1
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 10 - 183
Target Start/End: Original strand, 4700 - 4879
Alignment:
10 catcatcagataagcttgctaaatgatgagcatcagaagttcccatgatggatgcaacaatgtcaagtctggtagtgatcaaaattgatgcacctttc-- 107  Q
    ||||||||||||||| |   ||||||||||||  | ||||||||||||| ||||||||||||||||||||||| |||| ||||| |||||||||||||      
4700 catcatcagataagcctaacaaatgatgagcaggataagttcccatgattgatgcaacaatgtcaagtctggttgtgaccaaaactgatgcacctttcgt 4799  T
108 ----tttccattttgcaacaaagactttaacttattccatttctctttgtcttcagtccacacatcatcaagaacaagta 183  Q
        ||||||  |||||  ||| |||| |||| |||||||||||||| ||||||| ||||||||||||||||||||||||    
4800 gccatttccacgttgcagaaaatacttgaactgattccatttctcttggtcttcattccacacatcatcaagaacaagta 4879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 47 - 190
Target Start/End: Original strand, 13378155 - 13378304
Alignment:
47 agttcccatgatggatgcaacaatgtcaagtctggtagtgatcaaaattgatgcacctttcttt------ccattttgcaacaaagactttaacttattc 140  Q
    |||||||||||||||||||||||| |||||||  |||||||  ||||||||||  |||||| ||      |||  |||||||||| |||| ||||| | |    
13378155 agttcccatgatggatgcaacaatctcaagtcgcgtagtgactaaaattgatgatcctttccttgtaatgccacattgcaacaaaaacttgaacttttcc 13378254  T
141 catttctctttgtcttcagtccacacatcatcaagaacaagtaaatacct 190  Q
    |||||  | | ||||||| ||||||||||||| || ||||||||||||||    
13378255 catttaacatggtcttcattccacacatcatctagtacaagtaaatacct 13378304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 37; Significance: 0.000000000005; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 47 - 107
Target Start/End: Complemental strand, 7053363 - 7053303
Alignment:
47 agttcccatgatggatgcaacaatgtcaagtctggtagtgatcaaaattgatgcacctttc 107  Q
    |||||||||||| ||||||||||| |||||||| |||||||  |||||||||| |||||||    
7053363 agttcccatgatagatgcaacaatttcaagtcttgtagtgactaaaattgatgaacctttc 7053303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 47 - 107
Target Start/End: Complemental strand, 38939456 - 38939396
Alignment:
47 agttcccatgatggatgcaacaatgtcaagtctggtagtgatcaaaattgatgcacctttc 107  Q
    |||||||||||||||||||||||| |||||||  || ||||  ||||| ||||| ||||||    
38939456 agttcccatgatggatgcaacaatctcaagtcgtgttgtgactaaaatagatgcccctttc 38939396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0256 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0256
Description:

Target: scaffold0256; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 47 - 107
Target Start/End: Original strand, 9208 - 9268
Alignment:
47 agttcccatgatggatgcaacaatgtcaagtctggtagtgatcaaaattgatgcacctttc 107  Q
    |||||||||||||||||||||||| |||||||  || ||||  ||||| ||||||||||||    
9208 agttcccatgatggatgcaacaatatcaagtcgtgttgtgactaaaatagatgcacctttc 9268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University