View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6494_low_3 (Length: 650)
Name: NF6494_low_3
Description: NF6494
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6494_low_3 |
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Alignment Details
Target: chr3 (Bit Score: 557; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 557; E-Value: 0
Query Start/End: Original strand, 13 - 633
Target Start/End: Complemental strand, 43664033 - 43663413
Alignment:
| Q |
13 |
aatatcaaaaattaatttcacccttgattgctaactggagaccaagnnnnnnnnnnnnnnnntaatttagaaagtggcatgctttatcgagtcaatggag |
112 |
Q |
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| T |
43664033 |
aatatcaaaaattaatttcacccttgattgctaactggagaccaagaaaaaacaaaagaaaataatttagaaagtggcatgctttatcgagtcaatggag |
43663934 |
T |
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| Q |
113 |
cataaatataatgaatggaagttgaggatgaaacccactaattaattaatcaatttcagataaaataattgtaccaaaaaggtaaacgttgtagcatagt |
212 |
Q |
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| T |
43663933 |
cataaatataatgaatggaagttgaggatgaaacccactaattaattaatcaatttcagataaaataattgtaccaaaaaggtaaacgttgtagcatagt |
43663834 |
T |
|
| Q |
213 |
agctcacgaagtgtgtatcatttcattgctaacactgactaaccacactatagtggaccgctgaaatttgacttgccaattaaagcttagcagcacatta |
312 |
Q |
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||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
43663833 |
agctcacgaagtgtgtatcatttcattgctaacaccgactaaccacactatagtggaccgctgaaatttgacttgccaattaaagcttggcagcacatta |
43663734 |
T |
|
| Q |
313 |
atatatgctatgtttgcaacatagtaatgtggtaaatgcatgtgcgttagacactgataggtgaagaagagcattatcgttaaagcaatttgtaaggatg |
412 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
43663733 |
atatatgctatgtttgcaacatagtaatgtggtaaatgcatgtgcgttagacactaataggtgaagaagagcattatcgttaaagcagtttgtaaggatg |
43663634 |
T |
|
| Q |
413 |
ttgatttcttgtaccaaccgcaagaacgtaaataagaagaaaagaaagcaaaccaagaaagctacatagaaagatacacacacaaattctgcagtggatc |
512 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43663633 |
ttgatttcttgtaccaaccgcaagaacgtaaataagaagaaaagaaagcaaaccaagaaagctacatagaaagatacacacacaaattctgcagtggatc |
43663534 |
T |
|
| Q |
513 |
actttggtgtaccgttgctagaaaattgtatgaagttcacggttctcttcgtcctcatgtttgagactgtgattaaatttatcattgtgcaataaaagta |
612 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43663533 |
actttggtgtaccgttgctagaaaattgtatgaagttcacggttctcttcgtcctcatgtttgagactgtgattaaatttatcattgtgcaataaaagta |
43663434 |
T |
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| Q |
613 |
aaggacataaatatgtgcgct |
633 |
Q |
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| T |
43663433 |
aaggacataaatatgtgcgct |
43663413 |
T |
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