View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6494_low_4 (Length: 575)
Name: NF6494_low_4
Description: NF6494
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6494_low_4 |
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Alignment Details
Target: chr4 (Bit Score: 168; Significance: 9e-90; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 168; E-Value: 9e-90
Query Start/End: Original strand, 316 - 563
Target Start/End: Original strand, 42203316 - 42203569
Alignment:
| Q |
316 |
ctcaaaagtggcttaatgtttggaactaaaatcttttcaattctaggtattatgttcgaattacgctgagtttgactaaatcacggtgtcaccgtagnnn |
415 |
Q |
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| T |
42203316 |
ctcaaaagtggcttaatgtttggaagtaaaatcttttcaattctaggtattatgttcgaatgacgctgagtttaactaaatcacggtgtcaccgtagttt |
42203415 |
T |
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| Q |
416 |
nnnnnnnnnncatt------gttaaaattacggtgacatattataattatgtgaaattcaccgtcaatccaaacatgcagtatgttaggctagaaatctg |
509 |
Q |
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|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
42203416 |
tttttttttttttttttttggttaaaattacggtgacatattataattatgtgaaattcaccgtcaatccaaacatgcagtaagttaggctagaaatctg |
42203515 |
T |
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| Q |
510 |
caactgatgtttaacactttggattgagttgttgaattgaaagacttaaatatt |
563 |
Q |
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| T |
42203516 |
caactgatgtttaacactttggattgagttgttgaattgaaagacttaaatatt |
42203569 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 131; E-Value: 1e-67
Query Start/End: Original strand, 21 - 155
Target Start/End: Original strand, 42202990 - 42203124
Alignment:
| Q |
21 |
ggagaagcgtgcaaaagtgaagccagttagttctgtgagcaaagcgaattttgagttggaaaatataggtactgcttctaactagaatatctctattttg |
120 |
Q |
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| T |
42202990 |
ggagaagcgtgcaaaagtgaagccagttagttctgtgagcaaagcgaattttgagttggaaaatataggtactgcttctaactagaatatctctattttg |
42203089 |
T |
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| Q |
121 |
ttgtctactttttattttagttttgaaaaaattga |
155 |
Q |
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| T |
42203090 |
ttgtctactttttattttatttttgaaaaaattga |
42203124 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 225 - 317
Target Start/End: Original strand, 42203200 - 42203292
Alignment:
| Q |
225 |
agaaatttggaatcagtgtttgacttatgtttatagcttatgtggaagtgaattcagattcagatgtgggacctctgaatatagttgtggtct |
317 |
Q |
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| T |
42203200 |
agaaatttggaatcagtgtttgacttatgtttatagtttgtgtggaagtgaattcagattcagatgtgggacctctgaatatagttgtggtct |
42203292 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 21 - 58
Target Start/End: Original strand, 32060727 - 32060764
Alignment:
| Q |
21 |
ggagaagcgtgcaaaagtgaagccagttagttctgtga |
58 |
Q |
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| T |
32060727 |
ggagaagcgtgcaaaaatgaagccagttagctctgtga |
32060764 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 21 - 58
Target Start/End: Complemental strand, 13926545 - 13926508
Alignment:
| Q |
21 |
ggagaagcgtgcaaaagtgaagccagttagttctgtga |
58 |
Q |
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| T |
13926545 |
ggagaagcgtgcaaaagtgaagtcagttagctctgtga |
13926508 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 455 - 488
Target Start/End: Original strand, 4506757 - 4506790
Alignment:
| Q |
455 |
attatgtgaaattcaccgtcaatccaaacatgca |
488 |
Q |
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| T |
4506757 |
attatgtcaaattcaccgtcaatccaaacatgca |
4506790 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 21 - 50
Target Start/End: Original strand, 12523863 - 12523892
Alignment:
| Q |
21 |
ggagaagcgtgcaaaagtgaagccagttag |
50 |
Q |
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| T |
12523863 |
ggagaagcgtgcaaaagtgaagccagttag |
12523892 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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