View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6494_low_6 (Length: 467)
Name: NF6494_low_6
Description: NF6494
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6494_low_6 |
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Alignment Details
Target: chr3 (Bit Score: 396; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 396; E-Value: 0
Query Start/End: Original strand, 6 - 457
Target Start/End: Complemental strand, 35189611 - 35189165
Alignment:
| Q |
6 |
acatcaaactaataaaagaatgaaattttgaaaagaaagttatgaaagttaccagcaacatcttggccatcatagaaaccacggtgaacagtaccgaaag |
105 |
Q |
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| T |
35189611 |
acatgaaacaaataaaagaatgaaattttgaaaagaaacttatgaaagttaccagcaacatcttggccatcatagaaaccacggtgaacagtaccgaaag |
35189512 |
T |
|
| Q |
106 |
tgccacgagctaagacactcttgaggatgaggttagaaggatcaatttcccactcttctctttgctccatgttattaccaccagtagtagcaatagagtt |
205 |
Q |
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| T |
35189511 |
tgccacgagctaagacactcttgatgatgaggttagaaggatcaatttcccactcttctctttgctccatgttattaccaccagtagtagcaatagagtt |
35189412 |
T |
|
| Q |
206 |
tgagtgatcgtgaggataatcaccatttaccttgttgaagtgtttctcaagttgttcatcaatggtttttagatcaatttgatcagctctcacaaaccca |
305 |
Q |
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| T |
35189411 |
tgagtgatcatgagaagaatcatcatttaccttgttgaagtgtttctcaagttgttcatcaatggtttttagatcaatttgatcagctctcacaaaccca |
35189312 |
T |
|
| Q |
306 |
tcattcatttttccacaccctatcttctgaggatgtgattgattattggtgcagcataaatagaatagaatagaatagaggggacattgattgtggtaaa |
405 |
Q |
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| T |
35189311 |
tcattcatttttccacaccctatcttctgagaatgtgattgattattggtgcagcataaatagaatagaa-----tagaggggacattgattgtggtaaa |
35189217 |
T |
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| Q |
406 |
atgtagtattatggtggatagagagagtgtttgagttgtcgtttgatgatgt |
457 |
Q |
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| T |
35189216 |
atgtagtattatggtggatagagagagtgtttgagttgtcgtttgatgatgt |
35189165 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 46; Significance: 5e-17; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 56 - 157
Target Start/End: Complemental strand, 43970925 - 43970824
Alignment:
| Q |
56 |
accagcaacatcttggccatcatagaaaccacggtgaacagtaccgaaagtgccacgagctaagacactcttgaggatgaggttagaaggatcaatttcc |
155 |
Q |
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||||||||||||||| |||||| | |||||| |||||||| || |||||||||||||| | ||||| |||| |||||| |||||||||||||||||| |
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| T |
43970925 |
accagcaacatcttgagtatcataaacaccacgatgaacagtgccaaaagtgccacgagcaataacacttttgatgatgagtttagaaggatcaatttcc |
43970826 |
T |
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| Q |
156 |
ca |
157 |
Q |
| |
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| T |
43970825 |
ca |
43970824 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 234 - 308
Target Start/End: Complemental strand, 43970669 - 43970595
Alignment:
| Q |
234 |
accttgttgaagtgtttctcaagttgttcatcaatggtttttagatcaatttgatcagctctcacaaacccatca |
308 |
Q |
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| T |
43970669 |
accttgttgagatgtctttcaagctgttcatcgatgcttttcagatcaatctgatctgctcttacaaacccatca |
43970595 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 55 - 162
Target Start/End: Complemental strand, 1663862 - 1663755
Alignment:
| Q |
55 |
taccagcaacatcttggccatcatagaaaccacggtgaacagtaccgaaagtgccacgagctaagacactcttgaggatgaggttagaaggatcaatttc |
154 |
Q |
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|||||||||||||| ||||||||| | |||||| ||||||||||| ||||| |||||||| | |||| | |||| || || |||||||||||||| || |
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| T |
1663862 |
taccagcaacatctatgccatcataaacaccacgatgaacagtaccaaaagtaccacgagcaatgacagttttgataataagtttagaaggatcaatctc |
1663763 |
T |
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| Q |
155 |
ccactctt |
162 |
Q |
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||| |||| |
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| T |
1663762 |
ccattctt |
1663755 |
T |
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