View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6494_low_7 (Length: 459)
Name: NF6494_low_7
Description: NF6494
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6494_low_7 |
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Alignment Details
Target: chr5 (Bit Score: 405; Significance: 0; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 405; E-Value: 0
Query Start/End: Original strand, 17 - 441
Target Start/End: Original strand, 13267038 - 13267462
Alignment:
| Q |
17 |
atcaatgtatcctgtgctttcatccaatctatatggcattgtctcaaaaaatatagagactgcagatatctttttggtgtcggtctgcatagtgaagata |
116 |
Q |
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| T |
13267038 |
atcaatgtatcctgtgctttcatccaatctatatggcattgtctcaaaaaatatagagactgcagatatctttttggtgtcggtctgcatagtgaagata |
13267137 |
T |
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| Q |
117 |
ataactaataatttttaatctcaaaagaaagtacaaatcaatcaagacagaattcatgactatataaatgcataaaaattcaatatttcattaaagtact |
216 |
Q |
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| T |
13267138 |
ataactaataatttttaatttcaaaagaaagtacaaatcaatcaagacagaattcatgactatataaatgcataaaaattcaatatttcattaaagtact |
13267237 |
T |
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| Q |
217 |
gcgagctattaagaaaagatattctcagaaacaagtcaagaattcatgaccataagccaatccatacgtcgattgtagatttcactataacaggaaatga |
316 |
Q |
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| T |
13267238 |
gtgagctattagcaaaagatattctcagaaacaagtcaagaattcatgaccataagccaatccatacgttgattgtagatttcactataacaggaaatga |
13267337 |
T |
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| Q |
317 |
aagatgatagttgataatacctggtaaccatgagaaagatgtcctccatgagggagatcaagtgccatgattctgtcatgaggtttcaacaatgcagtgt |
416 |
Q |
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| T |
13267338 |
aagatgatagttgataatacctggtaaccatgagaaagatgtcctccatgagggagatcaagtgccatgattctgtcatgaggtttcaacaatgcagtgt |
13267437 |
T |
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| Q |
417 |
aaacatgaaaatttgaaggtgaacc |
441 |
Q |
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| T |
13267438 |
aaacatgaaaatttgaaggtgaacc |
13267462 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 335 - 420
Target Start/End: Complemental strand, 28323668 - 28323583
Alignment:
| Q |
335 |
acctggtaaccatgagaaagatgtcctccatgagggagatcaagtgccatgattctgtcatgaggtttcaacaatgcagtgtaaac |
420 |
Q |
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| T |
28323668 |
acctgatatccatgtgatagatgcccaccatgggggagatcaagtgccataattctctcatgaggtttcaataaagcagtgtaaac |
28323583 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 30 - 107
Target Start/End: Complemental strand, 28324703 - 28324626
Alignment:
| Q |
30 |
gtgctttcatccaatctatatggcattgtctcaaaaaatatagagactgcagatatctttttggtgtcggtctgcata |
107 |
Q |
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| T |
28324703 |
gtgctctcatccaacctgtatggcattgtttcaaagaatatagatacagctgatatcttcttggtgtcagtctgcata |
28324626 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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