View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6495_low_1 (Length: 704)
Name: NF6495_low_1
Description: NF6495
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6495_low_1 |
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Alignment Details
Target: chr1 (Bit Score: 171; Significance: 2e-91; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 171; E-Value: 2e-91
Query Start/End: Original strand, 19 - 193
Target Start/End: Original strand, 10738742 - 10738916
Alignment:
| Q |
19 |
aagagcaatacacttatgtattatatgaagaatcacatgtactgtgattaaaataattaaaacatggtgtttgtaagtcatatgcactgttatattttgc |
118 |
Q |
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| T |
10738742 |
aagagcaatacacttatgtattatatgaagaatcacatgtactgtgattaaaataattaaaacatggtgtttgtaagtcatatgcactgttatattttgc |
10738841 |
T |
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| Q |
119 |
tagtttatcttatttaacattactctttaaataatactaaaatatttgagaaaacaatgacttgatgcattactt |
193 |
Q |
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| T |
10738842 |
tagtttatcttatttaacattacactttaaataatactaaaatatttgagaaaacaatgacttgatgcattactt |
10738916 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 147; E-Value: 4e-77
Query Start/End: Original strand, 520 - 691
Target Start/End: Original strand, 10739382 - 10739553
Alignment:
| Q |
520 |
gttcaatgtttctgaaagcaatgcttattattctatcatcctaactggtgtaacatcacttagtcattctagccaccatctagcaaattgatggccnnnn |
619 |
Q |
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| T |
10739382 |
gttcaatgtttctgaaagcaatgcttattattctatcatcctaactggtgtaacatcacttagtcattctagccaccatctagcaaattgatggcaaaaa |
10739481 |
T |
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| Q |
620 |
nnngtatttcatatcaaagcttcaagctttcttgttaacagagaagagaaatctactaaatgctatatatat |
691 |
Q |
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| T |
10739482 |
aaagtatttcatatcaaagcttcaagctttcttgttaacagagaagagaaatctactaaatgctatatatat |
10739553 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 107; E-Value: 3e-53
Query Start/End: Original strand, 364 - 470
Target Start/End: Original strand, 10739226 - 10739332
Alignment:
| Q |
364 |
atatcttgtgatggaaggagtataaaatattgtcccacaaattattagatgcataaaacattagaacaaataatatcttaccatactcatacataggtta |
463 |
Q |
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| T |
10739226 |
atatcttgtgatggaaggagtataaaatattgtcccacaaattattagatgcataaaacattagaacaaataatatcttaccatactcatacataggtta |
10739325 |
T |
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| Q |
464 |
ggataaa |
470 |
Q |
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| T |
10739326 |
ggataaa |
10739332 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 90; E-Value: 4e-43
Query Start/End: Original strand, 178 - 286
Target Start/End: Original strand, 10738932 - 10739041
Alignment:
| Q |
178 |
acttgatgcattacttattgagctgcaaaatacagtttgaatttgtatattggtcacaaaaatattagtt-aaacttttcacgtaatcacgagacatgtt |
276 |
Q |
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| T |
10738932 |
acttgatgcattacttattgagctgcaaaatacagtttgaatttgtatattggtcacaaaagtaatagttaaaacttttcacttaatcacgagacatgtt |
10739031 |
T |
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| Q |
277 |
cctattcatt |
286 |
Q |
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| T |
10739032 |
cctattcatt |
10739041 |
T |
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