View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6496_high_4 (Length: 329)
Name: NF6496_high_4
Description: NF6496
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6496_high_4 |
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Alignment Details
Target: chr3 (Bit Score: 266; Significance: 1e-148; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 1 - 319
Target Start/End: Original strand, 11613433 - 11613750
Alignment:
| Q |
1 |
aactagccttttattatcttttttataacaagagataaaataaagtcgaattattttcttttaagatgttagctattttcataaactaacctnnnnnnng |
100 |
Q |
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| T |
11613433 |
aactagccttttattatcttttttataacaaaagataaaataaaatcaaattattttcttttaagatgttagctattttcataaactaacctaaaaaaag |
11613532 |
T |
|
| Q |
101 |
ttatgaaaacaaattgacaacggatatgacatgtccgttagttgttccttaagatcgctctgaaataaataatttcaaacagacctaccagggtccaatg |
200 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11613533 |
ttatgaaaacaaattgacaacggatatgacatgtccattagttgttccttaagatcgctctgaaataaataatttcaaacagacctaccagggtccaatg |
11613632 |
T |
|
| Q |
201 |
tgactcccagagggtttagaaataaggaaggcctttaattaatgacagttgcagcaaattcaatatctataatgagattatgaactaattaaattcaaat |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11613633 |
tgactcccagagggtttagaaataaggaaggcctttaattgatgacaattgcagcaaattcaatatctataatgagattatgaactaattaaattcaaat |
11613732 |
T |
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| Q |
301 |
atgtattccctatcctatg |
319 |
Q |
| |
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||||||| ||||||||||| |
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| T |
11613733 |
atgtatt-cctatcctatg |
11613750 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 21 - 58
Target Start/End: Original strand, 37788814 - 37788851
Alignment:
| Q |
21 |
ttttataacaagagataaaataaagtcgaattattttc |
58 |
Q |
| |
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| T |
37788814 |
ttttataacaaaagataaaataaagtccaattattttc |
37788851 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 19 - 60
Target Start/End: Original strand, 6988067 - 6988108
Alignment:
| Q |
19 |
ttttttataacaagagataaaataaagtcgaattattttctt |
60 |
Q |
| |
|
|||| |||||||| ||||||||||||||| |||||||||||| |
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| T |
6988067 |
ttttctataacaaaagataaaataaagtcaaattattttctt |
6988108 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 20 - 84
Target Start/End: Original strand, 34339859 - 34339923
Alignment:
| Q |
20 |
tttttataacaagagataaaataaagtcgaattattttcttttaagatgttagctattttcataa |
84 |
Q |
| |
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|||||| ||||| ||||||||||||||| |||||||||| | |||| | | | |||||||||||| |
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| T |
34339859 |
tttttaaaacaaaagataaaataaagtcaaattattttcgtataaggtataaactattttcataa |
34339923 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 20 - 88
Target Start/End: Original strand, 7623091 - 7623159
Alignment:
| Q |
20 |
tttttataacaagagataaaataaagtcgaattattttcttttaagatgttagctattttcataaacta |
88 |
Q |
| |
|
|||||||||||| || |||||||||||| || | |||| | |||| ||| |||||||||||||||||| |
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|
| T |
7623091 |
tttttataacaaaaggtaaaataaagtccaactctttttatataagctgtaagctattttcataaacta |
7623159 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 24 - 88
Target Start/End: Original strand, 7354161 - 7354225
Alignment:
| Q |
24 |
tataacaagagataaaataaagtcgaattattttcttttaagatgttagctattttcataaacta |
88 |
Q |
| |
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|||||||| |||||||||||| ||||| ||||||| | |||||| |||| ||||||||||||| |
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| T |
7354161 |
tataacaaaagataaaataaaatcgaactattttcatataagatacaagctgttttcataaacta |
7354225 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 24 - 84
Target Start/End: Original strand, 49517027 - 49517087
Alignment:
| Q |
24 |
tataacaagagataaaataaagtcgaattattttcttttaagatgttagctattttcataa |
84 |
Q |
| |
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|||||||| ||||||||||||||| |||| ||||| |||||| | | |||| ||||||||| |
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|
| T |
49517027 |
tataacaaaagataaaataaagtcaaattgttttcatttaagctataagctgttttcataa |
49517087 |
T |
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