View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6496_low_1 (Length: 643)

Name: NF6496_low_1
Description: NF6496
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6496_low_1
NF6496_low_1
[»] chr7 (2 HSPs)
chr7 (1-634)||(32202070-32202702)
chr7 (201-253)||(10453891-10453943)
[»] chr6 (2 HSPs)
chr6 (421-594)||(24902771-24902943)
chr6 (421-594)||(18818002-18818174)
[»] chr8 (2 HSPs)
chr8 (421-594)||(45485046-45485218)
chr8 (419-594)||(2149475-2149649)
[»] chr3 (3 HSPs)
chr3 (421-594)||(26904240-26904412)
chr3 (421-594)||(36616628-36616800)
chr3 (436-496)||(25375084-25375142)
[»] chr1 (3 HSPs)
chr1 (421-594)||(1015856-1016028)
chr1 (441-483)||(8730164-8730206)
chr1 (441-483)||(36430122-36430164)
[»] chr4 (3 HSPs)
chr4 (420-594)||(2159669-2159848)
chr4 (515-564)||(49077604-49077653)
chr4 (436-496)||(19879551-19879611)
[»] chr5 (2 HSPs)
chr5 (420-594)||(17075463-17075636)
chr5 (201-246)||(24476685-24476730)
[»] chr2 (2 HSPs)
chr2 (441-483)||(16960456-16960498)
chr2 (238-266)||(39017818-39017846)


Alignment Details
Target: chr7 (Bit Score: 555; Significance: 0; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 555; E-Value: 0
Query Start/End: Original strand, 1 - 634
Target Start/End: Original strand, 32202070 - 32202702
Alignment:
Q  1 aattcatacatatttcagtagttatagaagtaccctgtttttcaattcatacatataacatgtattttttaatcattacctttcaagtttaagcataagc 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  32202070 aattcatacatatttcagtagttatagaagtaccctgtttttcaattcatacatataacaggtattttttaatcattacctttcaagtttaagcataagc 32202169  T
Q  101 tgtagctacttgggttcccttgccttgcacaccttgtgtttgatttattgtttatatgatatagttttgtatttaactcaattattagtgaaattagtct 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32202170 tgtagctacttgggttcccttgccttgcacaccttgtgtttgatttattgtttatatgatatagttttgtatttaactcaattattagtgaaattagtct 32202269  T
Q  201 cttattgttataatatggcttatggttcagaaattgttagaaaattgcttatggttgtgttatgtacacagtgtgttgaagtttcttatatttttcattt 300  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  32202270 cttattgttataatatggcttatggttcagaaattgttagaaaattgcttatggttgtgttatgtacacagtgtgttgaagtttcttatatttttcattc 32202369  T
Q  301 ggttgttgttgctgttgcgcaattaatttgaagttggagcatgttctctatgatgaaattctgnnnnnnncacggtggtttctttgtacaattgtgttta 400  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||       || |||||||||||||||||||||||||||    
T  32202370 ggttgttgttgctgttgcgcaattaatttgaagttggcgcatgttctttatgatgaaattctgtttttttcatggtggtttctttgtacaattgtgttta 32202469  T
Q  401 caaagtcatttttctgctttattatgtgcattgttttgcccatcaacttcaattggcacttgttgcttgtgctaagactcatagctatgttagtggnnnn 500  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||        
T  32202470 caaagtcatttttctgctttattatgtgcattgttttgcccatcaacttcaattggcacttgttgcttgtgctaagactcatagctatgttagcgg-ttt 32202568  T
Q  501 nnngggtatggtcaatatgcttgttaatttcatacgatattctaacaagagacaagaattgcttcaagacaaacaagtagctcagtttgctaaacaatta 600  Q
       |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32202569 tttgggtatggtcaatatgcttgttaatttcatacgatattctaacaagagacaagaattgcttcaagacaaacaagtagctcagtttgctaaacaatta 32202668  T
Q  601 aggacaatgtgatgtttcttatttttagtataat 634  Q
    ||| |||||||||| |||||||||||||||||||    
T  32202669 aggtcaatgtgatgcttcttatttttagtataat 32202702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 201 - 253
Target Start/End: Original strand, 10453891 - 10453943
Alignment:
Q  201 cttattgttataatatggcttatggttcagaaattgttagaaaattgcttatg 253  Q
    ||||| |||| || |||||||||| ||||||||||||||||||||||||||||    
T  10453891 cttatcgttagaaaatggcttatgtttcagaaattgttagaaaattgcttatg 10453943  T

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Target: chr6 (Bit Score: 77; Significance: 2e-35; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 421 - 594
Target Start/End: Complemental strand, 24902943 - 24902771
Alignment:
Q  421 attatgtgcattgttttgcccatcaacttcaattggcacttgttgcttgtgctaagactcatagctatgttagtggnnnnnnngggtatggtcaatatgc 520  Q
    |||||||||||||||| || ||||||||| ||||||||||||||||||||| ||||||||| |    |||||||||       || || |||||||||||    
T  24902943 attatgtgcattgtttcgcacatcaacttaaattggcacttgttgcttgtgttaagactcacaaacctgttagtggtttcttcgg-taaggtcaatatgc 24902845  T
Q  521 ttgttaatttcatacgatattctaacaagagacaagaattgcttcaagacaaacaagtagctcagtttgctaaa 594  Q
    |||||||||||||||||  ||||||||||||||||||| ||||||  ||||||||| ||||||| |||||||||    
T  24902844 ttgttaatttcatacgagcttctaacaagagacaagaaatgcttcgggacaaacaactagctcaatttgctaaa 24902771  T

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Target: chr6; HSP #2
Raw Score: 73; E-Value: 5e-33
Query Start/End: Original strand, 421 - 594
Target Start/End: Complemental strand, 18818174 - 18818002
Alignment:
Q  421 attatgtgcattgttttgcccatcaacttcaattggcacttgttgcttgtgctaagactcatagctatgttagtggnnnnnnngggtatggtcaatatgc 520  Q
    |||||||||| ||||| || ||||||||||||||||||||||||||||||||||||||||| |    |||||||||       || || |||||| ||||    
T  18818174 attatgtgcactgtttcgcacatcaacttcaattggcacttgttgcttgtgctaagactcacaaacctgttagtggttttttcgg-taaggtcaacatgc 18818076  T
Q  521 ttgttaatttcatacgatattctaacaagagacaagaattgcttcaagacaaacaagtagctcagtttgctaaa 594  Q
    |||||||||||||||||  ||||||||||||||||||| |||| |  ||||||||| ||||||| |||||||||    
T  18818075 ttgttaatttcatacgagcttctaacaagagacaagaaatgctccgggacaaacaactagctcaatttgctaaa 18818002  T

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Target: chr8 (Bit Score: 73; Significance: 5e-33; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 73; E-Value: 5e-33
Query Start/End: Original strand, 421 - 594
Target Start/End: Original strand, 45485046 - 45485218
Alignment:
Q  421 attatgtgcattgttttgcccatcaacttcaattggcacttgttgcttgtgctaagactcatagctatgttagtggnnnnnnngggtatggtcaatatgc 520  Q
    |||||||||| ||||| || ||||||||||||||||||||||||||||||||||||||||| |    |||||||||       || || |||||| ||||    
T  45485046 attatgtgcactgtttcgcacatcaacttcaattggcacttgttgcttgtgctaagactcacaaacctgttagtggttttttcgg-taaggtcaacatgc 45485144  T
Q  521 ttgttaatttcatacgatattctaacaagagacaagaattgcttcaagacaaacaagtagctcagtttgctaaa 594  Q
    |||||||||||||||||  ||||||||||||||||||| |||| |  ||||||||| ||||||| |||||||||    
T  45485145 ttgttaatttcatacgagcttctaacaagagacaagaaatgctccgggacaaacaactagctcaatttgctaaa 45485218  T

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Target: chr8; HSP #2
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 419 - 594
Target Start/End: Complemental strand, 2149649 - 2149475
Alignment:
Q  419 ttattatgtgcattgttttgcccatcaacttcaattggcacttgttgcttgtgctaagactcatagctatgttagtggnnnnnnngggtatggtcaatat 518  Q
    ||||||||||||||||||  | ||||||||| |||||||| ||||||||||| |||||| ||| |   ||||||||||       || || |||||||||    
T  2149649 ttattatgtgcattgtttcacacatcaactttaattggcatttgttgcttgttctaagaatcacaaacatgttagtggttttattgg-taaggtcaatat 2149551  T
Q  519 gcttgttaatttcatacgatattctaacaagagacaagaattgcttcaagacaaacaagtagctcagtttgctaaa 594  Q
    | |||||||||||||| ||| |||||||||||||||| || |  |||| ||||||||| || |||| |||||||||    
T  2149550 gtttgttaatttcatatgatcttctaacaagagacaaaaaatatttcaggacaaacaactaactcaatttgctaaa 2149475  T

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Target: chr3 (Bit Score: 73; Significance: 5e-33; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 73; E-Value: 5e-33
Query Start/End: Original strand, 421 - 594
Target Start/End: Complemental strand, 26904412 - 26904240
Alignment:
Q  421 attatgtgcattgttttgcccatcaacttcaattggcacttgttgcttgtgctaagactcatagctatgttagtggnnnnnnngggtatggtcaatatgc 520  Q
    |||||||||| ||||| || ||||||||||||||||||||||||||||||||||||||||| |    |||||||||       || || |||||| ||||    
T  26904412 attatgtgcactgtttcgcacatcaacttcaattggcacttgttgcttgtgctaagactcacaaacctgttagtggttttttcgg-taaggtcaacatgc 26904314  T
Q  521 ttgttaatttcatacgatattctaacaagagacaagaattgcttcaagacaaacaagtagctcagtttgctaaa 594  Q
    |||||||||||||||||  ||||||||||||||||||| |||| |  ||||||||| ||||||| |||||||||    
T  26904313 ttgttaatttcatacgagcttctaacaagagacaagaaatgctccgggacaaacaactagctcaatttgctaaa 26904240  T

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Target: chr3; HSP #2
Raw Score: 73; E-Value: 5e-33
Query Start/End: Original strand, 421 - 594
Target Start/End: Original strand, 36616628 - 36616800
Alignment:
Q  421 attatgtgcattgttttgcccatcaacttcaattggcacttgttgcttgtgctaagactcatagctatgttagtggnnnnnnngggtatggtcaatatgc 520  Q
    |||||||||| ||||| || ||||||||||||||||||||||||||||||||||||||||| |    |||||||||       || || |||||| ||||    
T  36616628 attatgtgcactgtttcgcacatcaacttcaattggcacttgttgcttgtgctaagactcacaaacctgttagtggttttttcgg-taaggtcaacatgc 36616726  T
Q  521 ttgttaatttcatacgatattctaacaagagacaagaattgcttcaagacaaacaagtagctcagtttgctaaa 594  Q
    |||||||||||||||||  ||||||||||||||||||| |||| |  ||||||||| ||||||| |||||||||    
T  36616727 ttgttaatttcatacgagcttctaacaagagacaagaaatgctccgggacaaacaactagctcaatttgctaaa 36616800  T

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Target: chr3; HSP #3
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 436 - 496
Target Start/End: Complemental strand, 25375142 - 25375084
Alignment:
Q  436 ttgcccatcaacttcaattggcacttgttgcttgtgctaagactcatagctatgttagtgg 496  Q
    |||| ||||||||||||||| ||||||||||||||||||||||||||||  ||||||||||    
T  25375142 ttgctcatcaacttcaattgtcacttgttgcttgtgctaagactcatag--atgttagtgg 25375084  T

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Target: chr1 (Bit Score: 73; Significance: 5e-33; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 73; E-Value: 5e-33
Query Start/End: Original strand, 421 - 594
Target Start/End: Original strand, 1015856 - 1016028
Alignment:
Q  421 attatgtgcattgttttgcccatcaacttcaattggcacttgttgcttgtgctaagactcatagctatgttagtggnnnnnnngggtatggtcaatatgc 520  Q
    |||||||||| ||||| || ||||||||||||||||||||||||||||||||||||||||| |    |||||||||       || || |||||| ||||    
T  1015856 attatgtgcactgtttcgcacatcaacttcaattggcacttgttgcttgtgctaagactcacaaacctgttagtggttttttcgg-taaggtcaacatgc 1015954  T
Q  521 ttgttaatttcatacgatattctaacaagagacaagaattgcttcaagacaaacaagtagctcagtttgctaaa 594  Q
    |||||||||||||||||  ||||||||||||||||||| |||| |  ||||||||| ||||||| |||||||||    
T  1015955 ttgttaatttcatacgagcttctaacaagagacaagaaatgctccgggacaaacaactagctcaatttgctaaa 1016028  T

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Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 441 - 483
Target Start/End: Original strand, 8730164 - 8730206
Alignment:
Q  441 catcaacttcaattggcacttgttgcttgtgctaagactcata 483  Q
    |||||||||||||||||||||||||||| ||||| ||||||||    
T  8730164 catcaacttcaattggcacttgttgcttatgctaggactcata 8730206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 441 - 483
Target Start/End: Complemental strand, 36430164 - 36430122
Alignment:
Q  441 catcaacttcaattggcacttgttgcttgtgctaagactcata 483  Q
    |||||| |||||||||||||||| |||||||||||||||||||    
T  36430164 catcaatttcaattggcacttgtggcttgtgctaagactcata 36430122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 67; Significance: 2e-29; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 420 - 594
Target Start/End: Complemental strand, 2159848 - 2159669
Alignment:
Q  420 tattatgtgcattgttttgcccatcaacttcaattggcacttgttgcttgtgctaagactcatagctatgttagtggnnnnnnngg-----gtatggtca 514  Q
    ||||||||||||||||| || |||||||||||||| |||||||||||||||||||||||||| |   |||||| ||               |||  || |    
T  2159848 tattatgtgcattgtttcgcacatcaacttcaattagcacttgttgcttgtgctaagactcacaaacatgttactgtttttttttttttttgtaaagtta 2159749  T
Q  515 atatgcttgttaatttcatacgatattctaacaagagacaagaattgcttcaagacaaacaagtagctcagtttgctaaa 594  Q
    | |||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  2159748 acatgcttgttaatttcatacgagcttctaacaagagacaagaattgcttcaagacaaacaagtagctcagttttctaaa 2159669  T

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Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 515 - 564
Target Start/End: Original strand, 49077604 - 49077653
Alignment:
Q  515 atatgcttgttaatttcatacgatattctaacaagagacaagaattgctt 564  Q
    |||| |||||||||||||||| || || |||| |||||||||||||||||    
T  49077604 atattcttgttaatttcatacaatcttttaacgagagacaagaattgctt 49077653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 436 - 496
Target Start/End: Complemental strand, 19879611 - 19879551
Alignment:
Q  436 ttgcccatcaacttcaattggcacttgttgcttgtgctaagactcatagctatgttagtgg 496  Q
    |||| |||||||||| ||||||| ||||| ||||||||||||| ||||   ||||||||||    
T  19879611 ttgctcatcaacttcgattggcatttgttacttgtgctaagacacatacaaatgttagtgg 19879551  T

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Target: chr5 (Bit Score: 54; Significance: 1e-21; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 420 - 594
Target Start/End: Original strand, 17075463 - 17075636
Alignment:
Q  420 tattatgtgcattgttttgcccatcaacttcaattggcacttgttgcttgtgctaagactcatagctatgttagtggnnnnnnngggtatggtcaatatg 519  Q
    |||||||||||||||||  | ||||||||||||||   |||||||||||||||||||||||| |    |||||||||       || || ||||||||||    
T  17075463 tattatgtgcattgtttcacacatcaacttcaatttcaacttgttgcttgtgctaagactcacaaacctgttagtggtttttttgg-taaggtcaatatg 17075561  T
Q  520 cttgttaatttcatacgatattctaacaagagacaagaattgcttcaagacaaacaagtagctcagtttgctaaa 594  Q
    ||||||| ||||||| ||  ||||||||||||||||||| ||| ||  ||||||||| ||||||| ||| |||||    
T  17075562 cttgttagtttcatatgagcttctaacaagagacaagaaatgcgtcgggacaaacaactagctcaatttcctaaa 17075636  T

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Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 201 - 246
Target Start/End: Original strand, 24476685 - 24476730
Alignment:
Q  201 cttattgttataatatggcttatggttcagaaattgttagaaaatt 246  Q
    |||||||||| || ||||||||||||||||||||||||||||||||    
T  24476685 cttattgttagaaaatggcttatggttcagaaattgttagaaaatt 24476730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 31; Significance: 0.00000006; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 441 - 483
Target Start/End: Complemental strand, 16960498 - 16960456
Alignment:
Q  441 catcaacttcaattggcacttgttgcttgtgctaagactcata 483  Q
    |||||||||||||||| |||| |||||||||||| ||||||||    
T  16960498 catcaacttcaattggtacttattgcttgtgctaggactcata 16960456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 238 - 266
Target Start/End: Original strand, 39017818 - 39017846
Alignment:
Q  238 tagaaaattgcttatggttgtgttatgta 266  Q
    |||||||||||||||||||||||||||||    
T  39017818 tagaaaattgcttatggttgtgttatgta 39017846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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