View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6496_low_3 (Length: 475)

Name: NF6496_low_3
Description: NF6496
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6496_low_3
NF6496_low_3
[»] chr8 (6 HSPs)
chr8 (224-456)||(41291391-41291619)
chr8 (17-91)||(41291183-41291257)
chr8 (321-390)||(13521753-13521822)
chr8 (321-390)||(13611288-13611357)
chr8 (326-390)||(28626690-28626754)
chr8 (326-390)||(29912134-29912198)
[»] chr4 (2 HSPs)
chr4 (326-395)||(42098911-42098980)
chr4 (326-390)||(54639734-54639798)
[»] chr5 (1 HSPs)
chr5 (326-369)||(41360940-41360983)
[»] chr7 (1 HSPs)
chr7 (326-372)||(43638971-43639017)
[»] chr2 (5 HSPs)
chr2 (326-400)||(37426573-37426647)
chr2 (321-390)||(11730604-11730673)
chr2 (326-390)||(11074554-11074618)
chr2 (326-390)||(37744014-37744078)
chr2 (337-389)||(39632584-39632636)
[»] chr6 (1 HSPs)
chr6 (327-396)||(30326663-30326732)


Alignment Details
Target: chr8 (Bit Score: 161; Significance: 1e-85; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 161; E-Value: 1e-85
Query Start/End: Original strand, 224 - 456
Target Start/End: Original strand, 41291391 - 41291619
Alignment:
Q  224 accaaatattgagatataatatttttaattatagtgtcatgttaataaggatttaaaaataaaaataattggtaattttaatgtnnnnnnnnnnnnntta 323  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||             |||    
T  41291391 accaaagattgagatataatatttttaattatagtgtcatgttaataaggatttaaaaataaaaataattggtaattttaatgtaaaaaaaaa----tta 41291486  T
Q  324 tattttgatgtttcaatatattgaatatacaaatctccatataaaatttatactttaaacttcttattaaatgtcctgctattgttaacatttatcttaa 423  Q
    | ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| || ||||| ||||||||||||||||||||    
T  41291487 ttttttgatgtttcaatatgttgaatatacaaatctccatataaaatttatactttaaacttcttattaagtgccctgccattgttaacatttatcttaa 41291586  T
Q  424 ggtaaatggtaactaatgttccaaacattagtt 456  Q
    |||||||||||||||||||| ||||||||||||    
T  41291587 ggtaaatggtaactaatgtttcaaacattagtt 41291619  T

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Target: chr8; HSP #2
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 17 - 91
Target Start/End: Original strand, 41291183 - 41291257
Alignment:
Q  17 atgatttcaatttttagtttagctaatggaaacattacacattattaagaaagtgtgtctcgacaaaaataaaag 91  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41291183 atgatttcaatttttagtttagctaatggaaacattacacattattaagaaagtgtgtctcgacaaaaataaaag 41291257  T

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Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 321 - 390
Target Start/End: Original strand, 13521753 - 13521822
Alignment:
Q  321 ttatattttgatgtttcaatatattgaatatacaaatctccatataaaatttatactttaaacttcttat 390  Q
    |||| |||| |||||||||| | | ||||| |||||| || | ||||||||| |||||||||||||||||    
T  13521753 ttattttttaatgtttcaatgtgtagaatacacaaatttcaaaataaaatttctactttaaacttcttat 13521822  T

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Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 321 - 390
Target Start/End: Original strand, 13611288 - 13611357
Alignment:
Q  321 ttatattttgatgtttcaatatattgaatatacaaatctccatataaaatttatactttaaacttcttat 390  Q
    |||| |||| |||||||||| | | ||||| |||||| || | ||||||||| |||||||||||||||||    
T  13611288 ttattttttaatgtttcaatgtgtagaatacacaaatttcaaaataaaatttctactttaaacttcttat 13611357  T

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Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 326 - 390
Target Start/End: Original strand, 28626690 - 28626754
Alignment:
Q  326 ttttgatgtttcaatatattgaatatacaaatctccatataaaatttatactttaaacttcttat 390  Q
    ||||||||||||||| ||||||| | | |||| || | ||||| ||| |||||||||||||||||    
T  28626690 ttttgatgtttcaatgtattgaagacataaatttcaagataaattttttactttaaacttcttat 28626754  T

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Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 326 - 390
Target Start/End: Complemental strand, 29912198 - 29912134
Alignment:
Q  326 ttttgatgtttcaatatattgaatatacaaatctccatataaaatttatactttaaacttcttat 390  Q
    |||||||||||||||   ||||||| |||||| |  | ||||||||| |||||||||||||||||    
T  29912198 ttttgatgtttcaatgagttgaatacacaaattttaagataaaatttctactttaaacttcttat 29912134  T

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Target: chr4 (Bit Score: 38; Significance: 0.000000000003; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 326 - 395
Target Start/End: Complemental strand, 42098980 - 42098911
Alignment:
Q  326 ttttgatgtttcaatatattgaatatacaaatctccatataaaatttatactttaaacttcttattaaat 395  Q
    |||||||||||||||||||||||||||||||||   | |||||||||  | |||||||||||||| ||||    
T  42098980 ttttgatgtttcaatatattgaatatacaaatcctaaaataaaattttcattttaaacttcttatcaaat 42098911  T

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Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 326 - 390
Target Start/End: Original strand, 54639734 - 54639798
Alignment:
Q  326 ttttgatgtttcaatatattgaatatacaaatctccatataaaatttatactttaaacttcttat 390  Q
    ||||||||||||||| | || |||| ||||||| | | ||||||||| |||||||||||||||||    
T  54639734 ttttgatgtttcaatttgttcaatacacaaatcccaaaataaaatttctactttaaacttcttat 54639798  T

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Target: chr5 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 326 - 369
Target Start/End: Original strand, 41360940 - 41360983
Alignment:
Q  326 ttttgatgtttcaatatattgaatatacaaatctccatataaaa 369  Q
    ||||||||||||||||| || |||||||||||||| ||||||||    
T  41360940 ttttgatgtttcaatatgttaaatatacaaatctcaatataaaa 41360983  T

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Target: chr7 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 326 - 372
Target Start/End: Complemental strand, 43639017 - 43638971
Alignment:
Q  326 ttttgatgtttcaatatattgaatatacaaatctccatataaaattt 372  Q
    |||| |||||||||||||||||||| ||||||||| | |||||||||    
T  43639017 tttttatgtttcaatatattgaatacacaaatctcaaaataaaattt 43638971  T

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Target: chr2 (Bit Score: 31; Significance: 0.00000004; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 326 - 400
Target Start/End: Original strand, 37426573 - 37426647
Alignment:
Q  326 ttttgatgtttcaatatattgaatatacaaatctccatataaaatttatactttaaacttcttattaaatgtcct 400  Q
    ||||||| ||||||| | ||||||| ||||||| | |  |||||||| || |||||||||||||| |||||||||    
T  37426573 ttttgatatttcaatgtgttgaatacacaaatcccaaagtaaaatttctattttaaacttcttatcaaatgtcct 37426647  T

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Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 321 - 390
Target Start/End: Original strand, 11730604 - 11730673
Alignment:
Q  321 ttatattttgatgtttcaatatattgaatatacaaatctccatataaaatttatactttaaacttcttat 390  Q
    |||| |||| |||||||||||| ||||||| | ||||||| ||||||||| |  ||||||||||| ||||    
T  11730604 ttatttttttatgtttcaatatgttgaatacataaatctcaatataaaatgttcactttaaactttttat 11730673  T

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Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 326 - 390
Target Start/End: Original strand, 11074554 - 11074618
Alignment:
Q  326 ttttgatgtttcaatatattgaatatacaaatctccatataaaatttatactttaaacttcttat 390  Q
    |||| |||||||||| | ||||||| ||||||| | | | ||||||| |||||||||||||||||    
T  11074554 tttttatgtttcaatgtgttgaatacacaaatcccaagaaaaaatttctactttaaacttcttat 11074618  T

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Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 326 - 390
Target Start/End: Complemental strand, 37744078 - 37744014
Alignment:
Q  326 ttttgatgtttcaatatattgaatatacaaatctccatataaaatttatactttaaacttcttat 390  Q
    ||||||||||| ||||||||||||| | |||| |  | ||||||||| || ||||||||||||||    
T  37744078 ttttgatgttttaatatattgaatacataaattttaagataaaatttttattttaaacttcttat 37744014  T

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Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 337 - 389
Target Start/End: Original strand, 39632584 - 39632636
Alignment:
Q  337 caatatattgaatatacaaatctccatataaaatttatactttaaacttctta 389  Q
    ||||||||||| ||||||| | |  | ||||||||||||||||||||||||||    
T  39632584 caatatattgattatacaatttttaagataaaatttatactttaaacttctta 39632636  T

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Target: chr6 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 327 - 396
Target Start/End: Complemental strand, 30326732 - 30326663
Alignment:
Q  327 tttgatgtttcaatatattgaatatacaaatctccatataaaatttatactttaaacttcttattaaatg 396  Q
    |||||||||||||| | ||||||| ||||||| | | |||||||||  | |||||||||||||| |||||    
T  30326732 tttgatgtttcaatgtgttgaatacacaaatcccaagataaaatttccattttaaacttcttatcaaatg 30326663  T

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