View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6496_low_5 (Length: 306)

Name: NF6496_low_5
Description: NF6496
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6496_low_5
NF6496_low_5
[»] chr6 (5 HSPs)
chr6 (15-290)||(712965-713240)
chr6 (60-290)||(710512-710742)
chr6 (83-290)||(702266-702473)
chr6 (83-290)||(717568-717775)
chr6 (81-288)||(716825-717029)
[»] chr1 (1 HSPs)
chr1 (100-290)||(35313653-35313843)
[»] chr5 (2 HSPs)
chr5 (196-288)||(20357809-20357901)
chr5 (209-288)||(20353954-20354033)
[»] chr4 (3 HSPs)
chr4 (196-288)||(5278442-5278534)
chr4 (196-288)||(5286423-5286515)
chr4 (209-275)||(5282575-5282641)
[»] chr2 (1 HSPs)
chr2 (179-273)||(6235378-6235472)


Alignment Details
Target: chr6 (Bit Score: 248; Significance: 1e-138; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 248; E-Value: 1e-138
Query Start/End: Original strand, 15 - 290
Target Start/End: Complemental strand, 713240 - 712965
Alignment:
Q  15 catagggtaaaataaagaacaaatttaacaataaatttagtgattcaagcacatatcacagcctgcaattctagttgttgtccacccagaattgtttttg 114  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  713240 catagggtaaaataaagaacaaatttaacaataaatttagtgattcaagcacatatcacagcctgcaattctagttgttgtccacccagaattgtttttg 713141  T
Q  115 aagattgtcaactatattattgtcaacttgaaaagctttggtgagaacttctgaagagatttttggattagatccaaatacagcattagcaattgtgatt 214  Q
    |||||| || ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  713140 aagattatccactatattattgtcaacttgaaaagctttggtgagaacttctgaagaaatttttggattagatccaaatacagcattagcaattgtgatt 713041  T
Q  215 acacctggattttggctgctaagtccagcaatagcaactgcatttccatatcccacattcaattggaagtgaatga 290  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||| || ||||||||||| ||||||||||    
T  713040 acaccaggattttggctgctaagtccagcaatagcaactgcatttccatacccaacattcaattgaaagtgaatga 712965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 60 - 290
Target Start/End: Original strand, 710512 - 710742
Alignment:
Q  60 caagcacatatcacagcctgcaattctagttgttgtccacccagaattgtttttgaagattgtcaactatattattgtcaacttgaaaagctttggtgag 159  Q
    |||| |||||||||  ||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  710512 caagtacatatcacgacctgcaattctagttgttgtccacccaaaattgtttttgaagattgtccactatattattgtcaacttgaaaagctttggtgag 710611  T
Q  160 aacttctgaagagatttttggattagatccaaatacagcattagcaattgtgattacacctggattttggctgctaagtccagcaatagcaactgcattt 259  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  710612 aacttctgaagagatttttggattagatccaaatacagcattagcaattgtgattacaccaggattttggctgctaagtccagcaatagcaactgcattt 710711  T
Q  260 ccatatcccacattcaattggaagtgaatga 290  Q
    |||||||||||||||||||||||||||||||    
T  710712 ccatatcccacattcaattggaagtgaatga 710742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 83 - 290
Target Start/End: Original strand, 702266 - 702473
Alignment:
Q  83 ttctagttgttgtccacccagaattgtttttgaagattgtcaactatattattgtcaacttgaaaagctttggtgagaacttctgaagagatttttggat 182  Q
    ||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  702266 ttctagtagttgtccacccagaattgtttttgaagattgtccactatattattgtcaacttgaaaagctttggtgagaacttctgaagagatttttggat 702365  T
Q  183 tagatccaaatacagcattagcaattgtgattacacctggattttggctgctaagtccagcaatagcaactgcatttccatatcccacattcaattggaa 282  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  702366 tagatccaaatacagcattagcaattgtgattacacctggattttggctgctaagtccagcaatagcaactgcatttccatatcccacattcaattggaa 702465  T
Q  283 gtgaatga 290  Q
    ||||||||    
T  702466 gtgaatga 702473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 83 - 290
Target Start/End: Original strand, 717568 - 717775
Alignment:
Q  83 ttctagttgttgtccacccagaattgtttttgaagattgtcaactatattattgtcaacttgaaaagctttggtgagaacttctgaagagatttttggat 182  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  717568 ttctagttgttgtccacccagaattgtttttgaagattgtccactatattattgtcaacttgaaaagctttggtgagaacttctgaagagatttttggat 717667  T
Q  183 tagatccaaatacagcattagcaattgtgattacacctggattttggctgctaagtccagcaatagcaactgcatttccatatcccacattcaattggaa 282  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  717668 tagatccaaatacagcattagcaattgtgattacaccaggattttggctgctaagtccagcaatagcaactgcatttccatatcccacattcaattggaa 717767  T
Q  283 gtgaatga 290  Q
    ||||||||    
T  717768 gtgaatga 717775  T

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Target: chr6; HSP #5
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 81 - 288
Target Start/End: Complemental strand, 717029 - 716825
Alignment:
Q  81 aattctagttgttgtccacccagaattgtttttgaagattgtcaactatattattgtcaacttgaaaagctttggtgagaacttctgaagagatttttgg 180  Q
    ||||||| |||||||||| |||||||||||| ||||||||||||||||| |||||||| ||||||| ||| |||||||||| ||||||||| ||||   |    
T  717029 aattctaattgttgtccaaccagaattgtttctgaagattgtcaactatgttattgtccacttgaagagccttggtgagaagttctgaagaaattt---g 716933  T
Q  181 attagatccaaatacagcattagcaattgtgattacacctggattttggctgctaagtccagcaatagcaactgcatttccatatcccacattcaattgg 280  Q
    |||||| ||||||||  | |||  ||| ||||| || | || ||| |||||| ||||||||| |||  |||| ||||||||||  |||| |||   ||||    
T  716932 attagacccaaatacctccttaataatagtgataactcttgaattatggctgttaagtccagaaatgacaaccgcatttccatcccccatattatgttgg 716833  T
Q  281 aagtgaat 288  Q
    ||||||||    
T  716832 aagtgaat 716825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 55; Significance: 1e-22; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 100 - 290
Target Start/End: Complemental strand, 35313843 - 35313653
Alignment:
Q  100 ccagaattgtttttgaagattgtcaactatattattgtcaacttgaaaagctttggtgagaacttctgaagagatttttggattagatccaaatacagca 199  Q
    ||||||||| |||||||||| ||| | || ||| || || |||||||| |||||||||||||||||  |||| |||  ||| ||||||||||| ||||||    
T  35313843 ccagaattgcttttgaagatagtcgattacatttttatccacttgaaaggctttggtgagaacttccaaagaaattggtggtttagatccaaacacagca 35313744  T
Q  200 ttagcaattgtgattacacctggattttggctgctaagtccagcaatagcaactgcatttccatatcccacattcaattggaagtgaatga 290  Q
    || ||||| || || || || || |||||||| ||||| |||||||| ||||  || |  ||||| || || |||||||||||||||||||    
T  35313743 tttgcaatggtaatcactccagggttttggctactaagaccagcaatggcaatagcctccccataaccaacgttcaattggaagtgaatga 35313653  T

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Target: chr5 (Bit Score: 49; Significance: 5e-19; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 196 - 288
Target Start/End: Original strand, 20357809 - 20357901
Alignment:
Q  196 agcattagcaattgtgattacacctggattttggctgctaagtccagcaatagcaactgcatttccatatcccacattcaattggaagtgaat 288  Q
    |||||| ||||  ||||| || ||||||||||| ||||||||||||||||||||||| ||||| |||||||||||||||| ||| || |||||    
T  20357809 agcatttgcaacggtgataactcctggattttgactgctaagtccagcaatagcaacggcattgccatatcccacattcagttgaaaatgaat 20357901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 209 - 288
Target Start/End: Complemental strand, 20354033 - 20353954
Alignment:
Q  209 gtgattacacctggattttggctgctaagtccagcaatagcaactgcatttccatatcccacattcaattggaagtgaat 288  Q
    |||||||| ||||||||||| ||||||||||||||||||||||| || || |||||||||||||||| ||| || |||||    
T  20354033 gtgattactcctggattttgactgctaagtccagcaatagcaacagcgttgccatatcccacattcagttgaaaatgaat 20353954  T

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Target: chr4 (Bit Score: 45; Significance: 1e-16; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 196 - 288
Target Start/End: Original strand, 5278442 - 5278534
Alignment:
Q  196 agcattagcaattgtgattacacctggattttggctgctaagtccagcaatagcaactgcatttccatatcccacattcaattggaagtgaat 288  Q
    |||||| ||||  ||||| || ||||||||||| ||||||||||||||||||||||| || || |||||||||||||||| ||| || |||||    
T  5278442 agcatttgcaacagtgataactcctggattttgactgctaagtccagcaatagcaacagcgttgccatatcccacattcagttgaaaatgaat 5278534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 196 - 288
Target Start/End: Original strand, 5286423 - 5286515
Alignment:
Q  196 agcattagcaattgtgattacacctggattttggctgctaagtccagcaatagcaactgcatttccatatcccacattcaattggaagtgaat 288  Q
    |||||| ||||  ||||| || ||||||||||| ||||||||||||||||||||||| || || |||||||||||||||| ||| || |||||    
T  5286423 agcatttgcaacagtgataactcctggattttgactgctaagtccagcaatagcaacggcgttgccatatcccacattcagttgaaaatgaat 5286515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 209 - 275
Target Start/End: Complemental strand, 5282641 - 5282575
Alignment:
Q  209 gtgattacacctggattttggctgctaagtccagcaatagcaactgcatttccatatcccacattca 275  Q
    ||||| || ||||| ||||| ||||||||||||||||||||||| || || ||||||||||||||||    
T  5282641 gtgataactcctgggttttgactgctaagtccagcaatagcaacagcgttgccatatcccacattca 5282575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 179 - 273
Target Start/End: Original strand, 6235378 - 6235472
Alignment:
Q  179 ggattagatccaaatacagcattagcaattgtgattacacctggattttggctgctaagtccagcaatagcaactgcatttccatatcccacatt 273  Q
    |||||||||  ||| | |||||| ||||  ||||| || ||||| ||||| ||||||||||||||||||||||| || || ||||||||||||||    
T  6235378 ggattagatttaaacaaagcatttgcaacggtgataactcctgggttttgactgctaagtccagcaatagcaacagcgttgccatatcccacatt 6235472  T

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