View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6497_high_11 (Length: 270)
Name: NF6497_high_11
Description: NF6497
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6497_high_11 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 107; Significance: 1e-53; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 156 - 270
Target Start/End: Original strand, 29789657 - 29789771
Alignment:
| Q |
156 |
gacttggcaataattatttgtttgggctacctttaatgtgacaagatatacaaaacattgggatttattggtgagtaaatacaaaagatttgtatcatag |
255 |
Q |
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| T |
29789657 |
gactttgcaataattatttgtttgggctacctttaatgtgacaagatatacaaaacattgagatttattggtgagtaaatacaaaagatttgtatcatag |
29789756 |
T |
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| Q |
256 |
ggtagcctttaatcc |
270 |
Q |
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| T |
29789757 |
ggtagcctttaatcc |
29789771 |
T |
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Target: chr3 (Bit Score: 95; Significance: 1e-46; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 50 - 160
Target Start/End: Complemental strand, 6943408 - 6943298
Alignment:
| Q |
50 |
agcttcttctgtttgctaacctcctggacgtttatggaaaatccaataccttttcatgaatgcctgtaattatcaagaggtaagtttcaatcatttatct |
149 |
Q |
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| T |
6943408 |
agcttcttctgtttgctaacctcccggacgtttatggaaaatccaatacctcttcatgaatgcctgtaattatcatgaggtaagtttcaatcattaatct |
6943309 |
T |
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| Q |
150 |
cttggagactt |
160 |
Q |
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| T |
6943308 |
cttggagactt |
6943298 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 50 - 123
Target Start/End: Complemental strand, 6940212 - 6940139
Alignment:
| Q |
50 |
agcttcttctgtttgctaacctcctggacgtttatggaaaatccaataccttttcatgaatgcctgtaattatc |
123 |
Q |
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| T |
6940212 |
agcttcttctgtttgctaacctcccggacgtttatggaaaatccaataccttttcatgaatgcctgtaattatc |
6940139 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 16 - 108
Target Start/End: Original strand, 6787366 - 6787458
Alignment:
| Q |
16 |
catgtcttgacttaactgccaagttttctaaatcagcttcttctgtttgctaacctcctggacgtttatggaaaatccaataccttttcatga |
108 |
Q |
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| T |
6787366 |
catgtcctgtcttaacaaccaagttttcaaaatcagcttgttttgtttgctaacctcccggacgtttatggaatatccaattccttttcatga |
6787458 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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