View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6497_low_1 (Length: 651)
Name: NF6497_low_1
Description: NF6497
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6497_low_1 |
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Alignment Details
Target: chr1 (Bit Score: 512; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 512; E-Value: 0
Query Start/End: Original strand, 20 - 633
Target Start/End: Original strand, 40551018 - 40551631
Alignment:
| Q |
20 |
agccatcaagacgaacttctctaaacaatgcagaaaagaaaaatgttttactttggattttatgatggattaaatactcatagtactagtgaatggatta |
119 |
Q |
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| T |
40551018 |
agccatcaagacgaacttctctaaacaatgcagaaaagaaaaatgttttactttggattttatgatggattgaatactcatagtactagtgaatggatta |
40551117 |
T |
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| Q |
120 |
actgacattggtaaatcagacaagtgagactataatattaactgacattgataaatcagactaatcagactatgatatgatgatatattgatgtgtagcn |
219 |
Q |
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| T |
40551118 |
actgacattggtaaatcagacaagtgagactatgatattaactgacattgataaatcagactaatgagactatgatatgatgttatattgatgtgtggca |
40551217 |
T |
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| Q |
220 |
nnnnnntaaatattgcaaatacctaggacaaggtatcctcctggaaaaaactagtaaataacaaaacttgaagaaactttatatgcctataatgaaataa |
319 |
Q |
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| T |
40551218 |
aaaaaataaatattgcaaatacctaggacaaggtatcctcctggaaaaaactagtaaataacaaaacttgaagaaactttatatgcatataatgaaataa |
40551317 |
T |
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| Q |
320 |
ctactttaaaccactcataaaattatgaatctgaattacaaaagagaacccnnnnnnngcactctctaaatgagattagataacaaaaacacactgacag |
419 |
Q |
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| T |
40551318 |
ctactttaaaccactcataaaattatcaatcagaattacaaaagagaacccaaaaaaagcactctctaaatgagattagataacaaaaacacactgaaag |
40551417 |
T |
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| Q |
420 |
atcttttattcaaagattcatgcatcataccccaatgaaaacaagcaaagttccatacatctaacaccttaagaaggccttatttgcctagttcagtacc |
519 |
Q |
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| T |
40551418 |
accttttattcaaagattcatgcatcataccccaatgaaaacaagcaaagttccatacatataacaccttaagaaggctttatttgcctagttcagtacc |
40551517 |
T |
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| Q |
520 |
ttgcaagcctctaaaagtaacaaataataactaagataggatgtggctaggtattaaacaaagtgctgatatgggtatcctaaaagggatgagatacaaa |
619 |
Q |
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| T |
40551518 |
ttgcaagcctctaaaagtaacaaatagtaactaagataggatgtagctaggtattaaacaaagtgctgatatgggtatcctaaaaggtatgagatacaaa |
40551617 |
T |
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| Q |
620 |
agtttaactagatt |
633 |
Q |
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| T |
40551618 |
agtttaactagatt |
40551631 |
T |
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