View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6497_low_11 (Length: 312)
Name: NF6497_low_11
Description: NF6497
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6497_low_11 |
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Alignment Details
Target: chr2 (Bit Score: 250; Significance: 1e-139; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 21 - 302
Target Start/End: Original strand, 36760395 - 36760676
Alignment:
| Q |
21 |
tcagttccttcacataataacttcttcaccaagcgacaaaatggtcgtcttgtcctctcgttattaaacgatgaagaagaaattgatgatgagtttgagg |
120 |
Q |
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| T |
36760395 |
tcagttccttcacataataacttcttcaccaagcgacaaaatggtcgtcttgtcctctcgtttaataatgatgaagaagaaattgatgatgagtttgagg |
36760494 |
T |
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| Q |
121 |
aagatgagagtatgatagagaaaacacatatgttgtctagtgagataacaagtattcctaatttagaattagctgtgaataagtcaatttggttggttaa |
220 |
Q |
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| T |
36760495 |
aagatgagagtgtgatagagaaaacacatatgttgtctagtgagataacaaatatttctaatttagaattagctgtgaataagtcaatttggttggttaa |
36760594 |
T |
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| Q |
221 |
caaaagaccaaaatgttcaaagttcaaccaagtgttcaattttgaggatgttaaggttgtgcaacatggttcattgcctatg |
302 |
Q |
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| T |
36760595 |
caaaagaccaaaatgttcaaagttcaaccaagtgttcaattttgaggatgttaaggttgtgcaacatggttcattgcctatg |
36760676 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 25 - 293
Target Start/End: Original strand, 36788395 - 36788669
Alignment:
| Q |
25 |
ttccttcacataataacttcttcaccaagcgacaaaatggtcgtcttgtcctctcgttat-ta--aacgatgaagaagaaattgatgatgagtttgagga |
121 |
Q |
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| T |
36788395 |
ttccttcacctaataaattcttcgctaagcgacaaaatggtcgccttatcctcacgtttgctactaatgatgaagaagaaattgatgaggactttgagga |
36788494 |
T |
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| Q |
122 |
agatgagagtatgatagagaaaacacatatgttgtctagtgagataacaagtattcctaatttagaattagct---gtgaataagtcaatttggttggtt |
218 |
Q |
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| T |
36788495 |
agataagagtgtgatagagaaaacgcaaattttgtctagtgaaattacaaatgttcatagtttggaattaacgtcggtgaataagacaattgggttagtt |
36788594 |
T |
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| Q |
219 |
aacaaaagaccaaaatgttcaaagttcaaccaagtgttcaattttgaggatgttaaggttgtgcaacatggttca |
293 |
Q |
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| T |
36788595 |
aacaagagaccaaaacgttcaaagttcaaccaagtgtccaattttgatgatggtaatattgtgcaacatggttca |
36788669 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 182 - 298
Target Start/End: Original strand, 36796935 - 36797054
Alignment:
| Q |
182 |
tttagaattagctgtgaataagtcaatttggttggttaacaaaagaccaaaatgttca---aagttcaaccaagtgttcaattttgaggatgttaaggtt |
278 |
Q |
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| T |
36796935 |
tttagaattagtggtgaataaggcaattggattatttaacaagagtccaaaatggtcggagaagttcaacaaggtgattaattttgaggatgttaaggtt |
36797034 |
T |
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| Q |
279 |
gtgcaacatggttcattgcc |
298 |
Q |
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| T |
36797035 |
gttcaacatggttcattgcc |
36797054 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 95 - 148
Target Start/End: Original strand, 36796872 - 36796925
Alignment:
| Q |
95 |
agaagaaattgatgatgagtttgaggaagatgagagtatgatagagaaaacaca |
148 |
Q |
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| T |
36796872 |
agaataaattgacgatgagtttaaggaagatgagagtgtgatagagaagacaca |
36796925 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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