View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6497_low_16 (Length: 228)
Name: NF6497_low_16
Description: NF6497
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6497_low_16 |
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| [»] scaffold0075 (1 HSPs) |
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| [»] scaffold0203 (1 HSPs) |
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| [»] scaffold0010 (1 HSPs) |
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Alignment Details
Target: scaffold0075 (Bit Score: 161; Significance: 5e-86; HSPs: 1)
Name: scaffold0075
Description:
Target: scaffold0075; HSP #1
Raw Score: 161; E-Value: 5e-86
Query Start/End: Original strand, 1 - 207
Target Start/End: Original strand, 26411 - 26621
Alignment:
| Q |
1 |
acgtaagttgcatggacctattattgaaatatcaaccttattccaaacaaagatgaaatattgaacataattaaatatattcaatctaaagcaagatgac |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26411 |
acgtaagttgcatggacctattattgaaatatcaaccttattccaaacaaagatgaaatattgaacataattaaatatattcaatctaaagcaagatgac |
26510 |
T |
|
| Q |
101 |
acg--nnnnnnnncatgcataaagagtatgcatgga--gtgcaaacacataatgctaatatttgttttatagaattccttccacatgcttaatgagctta |
196 |
Q |
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||| ||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26511 |
acgttttttttttcatgcataaagagtatgcatggagtgtgcaaccacataatgctaatatttgttttatagaattccttccacatgcttaatgagctta |
26610 |
T |
|
| Q |
197 |
tgatcacatca |
207 |
Q |
| |
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||||||||||| |
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| T |
26611 |
tgatcacatca |
26621 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0203 (Bit Score: 138; Significance: 3e-72; HSPs: 1)
Name: scaffold0203
Description:
Target: scaffold0203; HSP #1
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 1 - 207
Target Start/End: Original strand, 2168 - 2375
Alignment:
| Q |
1 |
acgtaagttgcatggacctattattgaaatatcaaccttattccaaacaaagatgaaatattgaacataattaaatatattcaatctaaagcaagatgac |
100 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||| |
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| T |
2168 |
acgtaagttgcatggacctattattaaaatatcaaccttattccaaacaaagatgaaatattgaacataattaaatatatccaatctgaagcaagatgac |
2267 |
T |
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| Q |
101 |
acgnnnnnnnncatgcataaagagtatgcatgga--gtgcaaacacataatgcta-atatttgttttatagaattccttccacatgcttaatgagcttat |
197 |
Q |
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||| ||||||||||||||||||||||| ||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
2268 |
acg-tctttttcatgcataaagagtatgcatggagtgtgcaaacacataatgctatatattt-ttttatagaattccttccacatgcttaatgagcttat |
2365 |
T |
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| Q |
198 |
gatcacatca |
207 |
Q |
| |
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|||| ||||| |
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| T |
2366 |
gatctcatca |
2375 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 133; Significance: 3e-69; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 1 - 209
Target Start/End: Original strand, 14873922 - 14874131
Alignment:
| Q |
1 |
acgtaagttgcatggacctattattgaaatatcaaccttattccaaacaaagatgaaatattgaacataattaaatatattcaatctaaagcaagatgac |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||| |||||||||||| |
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| T |
14873922 |
acgtaagttgcatggacctattattgaaatatcaaccttattcgaaacaaagatgaaatattgaacataattaaatatatccaatctgaagcaagatgac |
14874021 |
T |
|
| Q |
101 |
acgnnnnnnnncatgcataaagagtatgcatgga--gtgcaaacacataatgcta-atatttgttttatagaattccttccacatgcttaatgagcttat |
197 |
Q |
| |
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|| ||||||||||||||||||||||| ||||||||| ||||||||| |||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
14874022 |
ac-atctttttcatgcataaagagtatgcatggagtgtgcaaacaaataatgctatatattt-ttttatagaattccttccacatgcttaatgagcttat |
14874119 |
T |
|
| Q |
198 |
gatcacatcatt |
209 |
Q |
| |
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|||| ||||||| |
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|
| T |
14874120 |
gatctcatcatt |
14874131 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 127; Significance: 1e-65; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 6 - 207
Target Start/End: Complemental strand, 20121259 - 20121055
Alignment:
| Q |
6 |
agttgcatggacctattattgaaatatcaaccttattccaaacaaagatgaaatattgaacataattaaatatattcaatctaaagcaagatgacacgnn |
105 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||| | |
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| T |
20121259 |
agttgcatggacctattattgaaatatcaaccttattccaaacaaagatgaaatattgaacataattaaatatatccaatctgaagcaagatgacatg-t |
20121161 |
T |
|
| Q |
106 |
nnnnnncatgcataaagagtatgcatgga--gtgcaaacacataatgc--taatatttgttttatagaattccttccacatgcttaatgagcttatgatc |
201 |
Q |
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||||||||||||||||||||||| ||||||||||||||||| || | ||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
20121160 |
ctttttcatgcataaagagtatgcatggagtgtgcaaacacataatgctatatttttttttttatagaattccttccacatgcttaatgagcttatgatc |
20121061 |
T |
|
| Q |
202 |
acatca |
207 |
Q |
| |
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||||| |
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|
| T |
20121060 |
tcatca |
20121055 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0010 (Bit Score: 113; Significance: 2e-57; HSPs: 1)
Name: scaffold0010
Description:
Target: scaffold0010; HSP #1
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 2 - 207
Target Start/End: Complemental strand, 136257 - 136051
Alignment:
| Q |
2 |
cgtaagttgcatggacctattattgaaatatcaaccttattccaaacaaagatgaaatattgaacataattaaatatattcaatctaaagcaagatgaca |
101 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||| |
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| T |
136257 |
cgtaagttgcatggacctattatttaaatatcaaccttattccaaacaaagatgaaatattgaacataattaaatatatccaatctgaagcaagatgaca |
136158 |
T |
|
| Q |
102 |
cgnnnnnnnncatgcataaagagtatgcatgga--gtgcaaacacataatgcta-atatttgttttatagaattccttccacatgcttaatgagcttatg |
198 |
Q |
| |
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|| |||||||||||||| |||||||| ||||||||||||||||||| |||||| ||||||| |||||||||||||||||||||||| || |
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| T |
136157 |
cg-tctttttcatgcataaagagtttgcatggagtgtgcaaacacataatgctatatattt-ttttatatgtttccttccacatgcttaatgagctcttg |
136060 |
T |
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| Q |
199 |
atcacatca |
207 |
Q |
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||| ||||| |
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| T |
136059 |
atctcatca |
136051 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 171 - 209
Target Start/End: Original strand, 8105665 - 8105703
Alignment:
| Q |
171 |
ttccttccacatgcttaatgagcttatgatcacatcatt |
209 |
Q |
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|
||||||||||||||||||||| ||||||||||||||||| |
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|
| T |
8105665 |
ttccttccacatgcttaatgaacttatgatcacatcatt |
8105703 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 161 - 209
Target Start/End: Original strand, 16346077 - 16346125
Alignment:
| Q |
161 |
ttttatagaattccttccacatgcttaatgagcttatgatcacatcatt |
209 |
Q |
| |
|
|||||||| ||||||||||||||||||||| ||| ||||| ||||||| |
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|
| T |
16346077 |
ttttataggtttccttccacatgcttaatgaacttttgatctcatcatt |
16346125 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 171 - 207
Target Start/End: Original strand, 6050980 - 6051016
Alignment:
| Q |
171 |
ttccttccacatgcttaatgagcttatgatcacatca |
207 |
Q |
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||||||||||||||||||||||||| ||||| ||||| |
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| T |
6050980 |
ttccttccacatgcttaatgagcttttgatctcatca |
6051016 |
T |
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