View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6497_low_2 (Length: 558)
Name: NF6497_low_2
Description: NF6497
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6497_low_2 |
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Alignment Details
Target: chr1 (Bit Score: 539; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 539; E-Value: 0
Query Start/End: Original strand, 1 - 551
Target Start/End: Complemental strand, 6993079 - 6992529
Alignment:
| Q |
1 |
tacctggatctttctctaagctcggtaacattacaaggcttgatctttctaataattatttatctggctctattccacctgaactaggtaccctttcaaa |
100 |
Q |
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|||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6993079 |
tacctgaatctttctctaagctcggtaacattacaaggcttgatctttcaaataattatttatctggctctattccacctgaactaggtaccctttcaaa |
6992980 |
T |
|
| Q |
101 |
tcttcaaaatttgaacctttctaacaattctttcacttcttcgcttccctctcagctaggtaatctttcaaagttggttgaactcgatcttagtatgaat |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6992979 |
tcttcaaaatttgaacctttctaacaattctttcacttcttcgcttccctctcagctaggtaatctttcaaagttggttgaactcgatcttagtatgaat |
6992880 |
T |
|
| Q |
201 |
tctctttctgggccgttgccgggtagtttgttgtcaatgcctaagttgctaatatttgatgtatcagacaacagtctcactgatccactaccaaaattgt |
300 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
6992879 |
tctctttctgggccgttgccgggtagtttgttgtcaatgcctaagttgctaatatttgatgtatcagaaaacagtctcactgatccactaccaaaattgt |
6992780 |
T |
|
| Q |
301 |
ctggtttaaatgttagctcaggtggcatattcaatctatcaaacaatttgttttatggacctgtgaatggttttatgaacaagattaaaacgattgattt |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6992779 |
ctggtttaaatgttagctcaggtggcatattcaatctatcaaacaatttgttttatggacctgtgaatggttttatgaacaagattaaaacgattgattt |
6992680 |
T |
|
| Q |
401 |
gtccagtaattatctggaaggtgatgtgcaaggtgatggtggtagtcttagtgatgttgctttagccagaaattgcctacagatgatttcaaaccagaga |
500 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6992679 |
gtccagtaattatctggaaggtgatgtgcaaggtgatggtggtagtcttagtgatgttgctttagccagaaattgcctacagatgatttcaaaccagaga |
6992580 |
T |
|
| Q |
501 |
aatttggaagagtgtagaatgttttatgtccagagaaatttaacctttgct |
551 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6992579 |
aatttggaagagtgtagaatgttttatgtccagagaaatttaacctttgct |
6992529 |
T |
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