View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6497_low_4 (Length: 462)
Name: NF6497_low_4
Description: NF6497
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6497_low_4 |
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Alignment Details
Target: chr4 (Bit Score: 404; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 404; E-Value: 0
Query Start/End: Original strand, 37 - 444
Target Start/End: Complemental strand, 26479936 - 26479529
Alignment:
| Q |
37 |
tactacgatttgtcaattaatgacatgagagttttgaggtatatatatttgctgtttcttatctactcttttctttgttttattttctactgctgataca |
136 |
Q |
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| T |
26479936 |
tactacgatttgtcaattaatgacatgagagttttgaggtatatatatttgctgtttcttatctactcttttctttgttttattttctactgctgataca |
26479837 |
T |
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| Q |
137 |
atatctatctgctactgttttgcccctttcaaggcccaccaagaattccgaaaaatgtctcaccacttgcaaatatataggaaaattaattggaaaacct |
236 |
Q |
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| T |
26479836 |
atatctatctgctactgttttgcccctttcaaggcccaccaagaattccaaaaaatgtctcaccacttgcaaatatataggaaaattaattggaaaacct |
26479737 |
T |
|
| Q |
237 |
tcttatcttaatcttatctaattgatatctatatgtaccaaaataataattgtgggagggagatgcgagatggcatatcaggaagagagcagcagattca |
336 |
Q |
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| T |
26479736 |
tcttatcttaatcttatctaattgatatctatatgtaccaaaataataattgtgggagggagatgcgagatggcatatcaggaagagagcagcagattca |
26479637 |
T |
|
| Q |
337 |
atgtacaaaattgtacaaggaagggaatcatatttagtggctagaatgaattaaagatgttgggttcttgaaatttgagactctattggaagtatctatt |
436 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26479636 |
atgtacaaaattgtacaaggaagggaatcatatttagtggctagaatgaattaaagatgttgggttcttgaaatttgagactctattggaagtatctatt |
26479537 |
T |
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| Q |
437 |
gctccatt |
444 |
Q |
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| T |
26479536 |
gctccatt |
26479529 |
T |
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