View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6497_low_5 (Length: 452)

Name: NF6497_low_5
Description: NF6497
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6497_low_5
NF6497_low_5
[»] chr1 (1 HSPs)
chr1 (13-452)||(29789331-29789771)


Alignment Details
Target: chr1 (Bit Score: 400; Significance: 0; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 400; E-Value: 0
Query Start/End: Original strand, 13 - 452
Target Start/End: Original strand, 29789331 - 29789771
Alignment:
Q  13 ataatactggtaagaaaagataacataaatgttgagtaagtgatgatatatagaataaagaaaattaatgaaataatatcnnnnnnn-ggaatacattga 111  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||        ||||||||||||    
T  29789331 ataatattggtaagaaaagataacataaatgttgagtaagtgatgatatatagaataaagaaaattaatgaaataatatcttttttttggaatacattga 29789430  T
Q  112 caaagtgagttacttgacttaatagcaggggaacttgtgacattttgtctagctcttttcaaatatgaacaatttactaattagatagtgtcataagaaa 211  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29789431 caaagtgagttacttgacttaatagcaggggaacttgtgacattttgtctagctcttttcaaatatgaacaatttactaattagatagtgtcataagaaa 29789530  T
Q  212 agagatacttttaaagcagatcccttaaaaggagtaatgataacaagaaaggtttataaacaagtaagcagaagaaagaagtaaaatcggttgagggcca 311  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29789531 agagatacttttaaagcagatcccttaaaaggagtaatgataacaagaaaggtttataaacaagtaagcagaagaaagaagtaaaatcggttgagggcca 29789630  T
Q  312 acaaattttcctcattttgttagcttgacttggcaataattatttgtttgggctacctttaatgtgacaagatatacaaaacattgggatttattggtga 411  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  29789631 acaaattttcctcattttgttagcttgactttgcaataattatttgtttgggctacctttaatgtgacaagatatacaaaacattgagatttattggtga 29789730  T
Q  412 gtaaatacaaaagatttgtatcatagggtagcctttaatcc 452  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  29789731 gtaaatacaaaagatttgtatcatagggtagcctttaatcc 29789771  T

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