View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6497_low_6 (Length: 435)

Name: NF6497_low_6
Description: NF6497
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6497_low_6
NF6497_low_6
[»] chr2 (3 HSPs)
chr2 (10-435)||(36760719-36761150)
chr2 (247-433)||(36775870-36776047)
chr2 (214-384)||(36788739-36788906)


Alignment Details
Target: chr2 (Bit Score: 262; Significance: 1e-146; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 10 - 435
Target Start/End: Complemental strand, 36761150 - 36760719
Alignment:
Q  10 acatcatcaacataccattatattattttggttgtgtaattgtcaatacaatagacannnnnnnnn--aaatgatcaataccaaaaacagtgtatagtgc 107  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||           ||||||||||||||||||||||||||||||||    
T  36761150 acatcatcaacataccattatattattttggttgtgtaattgtcaatacaatagacatttttttttttaaatgatcaataccaaaaacagtgtatagtgc 36761051  T
Q  108 atatatctcccttacannnnnnnn----atttgaacacaactctaagnnnnnnnngttgaacaaaaagagagaaaatgacatggatgaataaannnnnnn 203  Q
    |||| |||||||||||            |||||||||||||||||||        ||||||||||||||||||||||||||||||||||| ||           
T  36761050 atatctctcccttacattttttttttttatttgaacacaactctaagaaaaaaaagttgaacaaaaagagagaaaatgacatggatgaatgaaagagaga 36760951  T
Q  204 nnnnnnnnnntcaggtagcaatgcaacattggtcccagaacataaaagaccttgtaattctagaatccttgcaaaacttcaaactatgaaccaaataatc 303  Q
              |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  36760950 gagagagagatcaggtagcaatgcaacattggtcccagaacataaaagaccttgtagttctagaatccttgcaaaacttcaaactatgaaccaaataatc 36760851  T
Q  304 cttattcacacctctcaaaacaaacaactgttgtgaatcttttgatgcttcatttgaagctaattgatttatgttcatgtttccagagacaacgttaaca 403  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36760850 cttattcacacctctcaaaacaaacaactgttgtgaatcttgtgatgcttcatttgaagctaattgatttatgttcatgtttccagagacaacgttaaca 36760751  T
Q  404 accttgttgctaatactattttgttgatcact 435  Q
    ||||||||||||||||||||||||||||||||    
T  36760750 accttgttgctaatactattttgttgatcact 36760719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 247 - 433
Target Start/End: Complemental strand, 36776047 - 36775870
Alignment:
Q  247 aaaagaccttgtaattctagaatccttgcaaaacttcaaactatgaaccaaataatccttattcacacctctcaaaacaaacaactgttgtgaatctttt 346  Q
    |||||||||||||  ||||||| | ||||| |||   ||| | |||||||| |||||||||||     | |||||||||||||| |||||| ||||||||    
T  36776047 aaaagaccttgtagctctagaagctttgcataacccaaaattgtgaaccaagtaatccttatttttctcactcaaaacaaacaagtgttgtaaatctttt 36775948  T
Q  347 gatgcttcatttgaagctaattgatttatgttcatgtttccagagacaacgttaacaaccttgttgctaatactattttgttgatca 433  Q
    ||||||||||||||| |   ||||| |||||||||||| | | ||||      || |||||||||||||||||||||||||||||||    
T  36775947 gatgcttcatttgaacc---ttgatatatgttcatgttcctatagac------aataaccttgttgctaatactattttgttgatca 36775870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 214 - 384
Target Start/End: Complemental strand, 36788906 - 36788739
Alignment:
Q  214 tcaggtagcaatgcaacattggtcccagaacataaaagaccttgtaattctagaatccttgcaaaacttcaaactatgaaccaaataatccttattcaca 313  Q
    ||||||||||||| ||||  ||||||  |||| |||||||||||||  |||| |||| ||||||||| |||||   |||||||| | |||||||||        
T  36788906 tcaggtagcaatgtaacaagggtcccttaacaaaaaagaccttgtagctctataatctttgcaaaacctcaaatcgtgaaccaacttatccttatttttc 36788807  T
Q  314 cctctcaaaacaaacaactgttgtgaatcttttgatgcttcatttgaagctaattgatttatgttcatgtt 384  Q
    || |||||||||||||| ||| || |||||| |||||||||||||||| |   ||||| ||||||||||||    
T  36788806 ccactcaaaacaaacaagtgtggtaaatcttgtgatgcttcatttgaacc---ttgatatatgttcatgtt 36788739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University