View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6497_low_9 (Length: 342)
Name: NF6497_low_9
Description: NF6497
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6497_low_9 |
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Alignment Details
Target: chr7 (Bit Score: 231; Significance: 1e-127; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 13 - 327
Target Start/End: Complemental strand, 34068666 - 34068359
Alignment:
| Q |
13 |
aatattttattcacctttatttaatttagttttcccgcatttcaactcattccattcttggtcaaaaaaataaagtcattccattcgagttcgacagttn |
112 |
Q |
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| T |
34068666 |
aatattttattcacctttatttaatttagttttcccgcatttcaactcattccattcttggtcaaaaaaataaagtcattccattcga------cagtta |
34068573 |
T |
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| Q |
113 |
nnnnnnnncaaaatacatttcattctactggtttctctgttgtagccacgtgtttttcccaacccctctccttcttcatgatccatcttccttctcttat |
212 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34068572 |
aaaaaaa-caaaatacatttcattctactggtttctctgttgtagccacgtgtttttcccaacccctctccttcttcatgatccatcttccttctcttat |
34068474 |
T |
|
| Q |
213 |
tttccttcatccnnnnnnncattgttcttcttttctctcttcatcaatgtcaaatgtcgttcgcttcgtcttttcgtgaaaaaacggtttcattcttcta |
312 |
Q |
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|||||||||||| ||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
34068473 |
tttccttcatccaaaaaaacattgttcttcttttctctattcatcaatgtcaaatgtcgtttgcttcgtcttttcgtgaaaaaacggtttcattcttcta |
34068374 |
T |
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| Q |
313 |
ttccacggtattact |
327 |
Q |
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||||||||||||||| |
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| T |
34068373 |
ttccacggtattact |
34068359 |
T |
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