View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6498_high_10 (Length: 302)
Name: NF6498_high_10
Description: NF6498
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6498_high_10 |
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Alignment Details
Target: chr5 (Bit Score: 254; Significance: 1e-141; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 1 - 289
Target Start/End: Complemental strand, 3543883 - 3543601
Alignment:
| Q |
1 |
catttaaagtcatgaaggagaaaaattgaaatcactcaaaaatagaaccaaattctcaattaacaggatgtgtatattgtgattttaaaaacaattttac |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3543883 |
catttaaagtcatgaaggagaaaaattgaaatcactcaaaaacagaaccaaattctcaattaacaggatgtgtatattgtgattttaaaaacaattttac |
3543784 |
T |
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| Q |
101 |
aagatttccaactaacgatacattagtcatacatactagtatttcaaaatttacaactcatttactatgatatcatagcaaagaaagtattatatatcgc |
200 |
Q |
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||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3543783 |
aagatttccaactaaagatacattagtcatac------gtatttcaaaatttacaactcatttactatgatatcatagcaaagaaagtattatatatcgc |
3543690 |
T |
|
| Q |
201 |
atatttgatacaattatcgacggcacggttttccacaaatggtgataataaagtaagaaacaaaacatactatccacactaaactgtaa |
289 |
Q |
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|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3543689 |
atatttgatacaattatcgacggcacagttttccacaaatggtgataataaagtaagaaacaaaacatactatccacactaaactgtaa |
3543601 |
T |
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