View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6498_high_15 (Length: 229)
Name: NF6498_high_15
Description: NF6498
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6498_high_15 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 191; Significance: 1e-104; HSPs: 9)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 1 - 220
Target Start/End: Original strand, 5160278 - 5160497
Alignment:
| Q |
1 |
aacattaattatatggatatatcaaacaacaatttaagtgggttgctaacaaaagattttgatttattccttccaagtgctacacagttgaacttttcat |
100 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5160278 |
aacattaattatttggatatatcaaacaacaatttaagtgggttgctaacaaaagattttgatttattccttccaagtgctacacagttgaacttttcat |
5160377 |
T |
|
| Q |
101 |
ggaatagctttgaaggaaatataccttcatcaattggtaagatnnnnnnncttttgctcttggacctctctcataatcatttctcgggtgagttaccaaa |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5160378 |
ggaatagctttgaaggaaatataccttcatcaattggtaagataaaaaaacttttgctcttggacctctctcataatcatttctcgggtgagttaccaaa |
5160477 |
T |
|
| Q |
201 |
acaactggccacaggttctg |
220 |
Q |
| |
|
|||||||||||||| ||||| |
|
|
| T |
5160478 |
acaactggccacagattctg |
5160497 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 1 - 217
Target Start/End: Original strand, 5182523 - 5182739
Alignment:
| Q |
1 |
aacattaattatatggatatatcaaacaacaatttaagtgggttgctaacaaaagattttgatttattccttccaagtgctacacagttgaacttttcat |
100 |
Q |
| |
|
||||| |||||| |||||||||||||||||||||| ||||| ||||| |||||||| ||| | |||||||||| |||| || | ||||||||||||| |
|
|
| T |
5182523 |
aacatgaattatttggatatatcaaacaacaatttgagtggtttgcttccaaaagatattggtatattccttcctagtgttaagtatttgaacttttcat |
5182622 |
T |
|
| Q |
101 |
ggaatagctttgaaggaaatataccttcatcaattggtaagatnnnnnnncttttgctcttggacctctctcataatcatttctcgggtgagttaccaaa |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| ||| | ||||||||||||||| ||||||||||| ||||||||||| || |
|
|
| T |
5182623 |
ggaatagctttgaaggaaatataccttcatcaattggtaagatgaaacaacttgagtacttggacctctctcagaatcatttctcaggtgagttacctaa |
5182722 |
T |
|
| Q |
201 |
acaactggccacaggtt |
217 |
Q |
| |
|
||||||||||||||||| |
|
|
| T |
5182723 |
acaactggccacaggtt |
5182739 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 99; E-Value: 5e-49
Query Start/End: Original strand, 14 - 217
Target Start/End: Original strand, 5195936 - 5196139
Alignment:
| Q |
14 |
tggatatatcaaacaacaatttaagtgggttgctaacaaaagattttgatttattccttccaagtgctacacagttgaacttttcatggaatagctttga |
113 |
Q |
| |
|
|||||||||||||||||||||| ||||| ||||| |||||||| | | | |||||||||| | || ||| | |||||||||||||||||||||||||| |
|
|
| T |
5195936 |
tggatatatcaaacaacaatttgagtggtttgcttccaaaagatatcggtatattccttcctaatgttacctatttgaacttttcatggaatagctttga |
5196035 |
T |
|
| Q |
114 |
aggaaatataccttcatcaattggtaagatnnnnnnncttttgctcttggacctctctcataatcatttctcgggtgagttaccaaaacaactggccaca |
213 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||| ||||||||| ||||||| ||||||||||| ||||||||||| ||||||||||||||| |
|
|
| T |
5196036 |
aggaaatataccttcatcaattggtaagatgaaacaacttcaactcttggacttctctcaaaatcatttctcaggtgagttacctaaacaactggccaca |
5196135 |
T |
|
| Q |
214 |
ggtt |
217 |
Q |
| |
|
|||| |
|
|
| T |
5196136 |
ggtt |
5196139 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 14 - 217
Target Start/End: Original strand, 5214093 - 5214296
Alignment:
| Q |
14 |
tggatatatcaaacaacaatttaagtgggttgctaacaaaagattttgatttattccttccaagtgctacacagttgaacttttcatggaatagctttga |
113 |
Q |
| |
|
|||||||||||| ||||| ||||||||| || || |||||||| ||| | |||||||||| |||| ||| | |||| ||||||| |||| |||||| |
|
|
| T |
5214093 |
tggatatatcaatcaacagtttaagtggttttcttccaaaagatattggtatattccttcctagtgttacctatatgaatttttcatcaaataactttga |
5214192 |
T |
|
| Q |
114 |
aggaaatataccttcatcaattggtaagatnnnnnnncttttgctcttggacctctctcataatcatttctcgggtgagttaccaaaacaactggccaca |
213 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||| | ||||||||||||||||||||||||||| ||||||||||| ||||||||||||||| |
|
|
| T |
5214193 |
aggaaatataccttcatcaattggtaagatgaaaaaacttgagtccttggacctctctcataatcatttctcaggtgagttacctaaacaactggccaca |
5214292 |
T |
|
| Q |
214 |
ggtt |
217 |
Q |
| |
|
|||| |
|
|
| T |
5214293 |
ggtt |
5214296 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 65 - 213
Target Start/End: Original strand, 5173252 - 5173400
Alignment:
| Q |
65 |
tattccttccaagtgctacacagttgaacttttcatggaatagctttgaaggaaatataccttcatcaattggtaagatnnnnnnncttttgctcttgga |
164 |
Q |
| |
|
|||||||||||||| ||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| | ||| || |
|
|
| T |
5173252 |
tattccttccaagtattacctatttgaacttttcatggaatagctttgaaggaaatataccttcatcaattggtaagatgaaaaatcttgagtactttga |
5173351 |
T |
|
| Q |
165 |
cctctctcataatcatttctcgggtgagttaccaaaacaactggccaca |
213 |
Q |
| |
|
||||||||||||| ||||||| ||||||||||| ||||||||||||||| |
|
|
| T |
5173352 |
cctctctcataataatttctcaggtgagttacctaaacaactggccaca |
5173400 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 14 - 210
Target Start/End: Complemental strand, 4842321 - 4842125
Alignment:
| Q |
14 |
tggatatatcaaacaacaatttaagtgggttgctaacaaaagattttgatttattccttccaagtgctacacagttgaacttttcatggaatagctttga |
113 |
Q |
| |
|
||||| |||||||||||||||| ||||| ||||| || ||||| ||| | |||||||||| |||| ||| | |||| ||||||| |||| |||||| |
|
|
| T |
4842321 |
tggatctatcaaacaacaattttagtggtttgcttccagaagatattggtatattccttcctagtgttacctatatgaatttttcatcaaataactttga |
4842222 |
T |
|
| Q |
114 |
aggaaatataccttcatcaattggtaagatnnnnnnncttttgctcttggacctctctcataatcatttctcgggtgagttaccaaaacaactggcc |
210 |
Q |
| |
|
|||||||||||||||||||||| ||||||| ||| | ||||||||||||||| ||||||||||| ||||||||||| |||||||||||| |
|
|
| T |
4842221 |
aggaaatataccttcatcaatttgtaagatgaaaaaacttaagtacttggacctctctcagaatcatttctcaggtgagttacctaaacaactggcc |
4842125 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 1 - 123
Target Start/End: Complemental strand, 4856808 - 4856686
Alignment:
| Q |
1 |
aacattaattatatggatatatcaaacaacaatttaagtgggttgctaacaaaagattttgatttattccttccaagtgctacacagttgaacttttcat |
100 |
Q |
| |
|
||||| |||||| |||||||||||||||||||||| ||||| ||||| |||||||| ||| | |||||||||| |||| ||| | |||||| |||||| |
|
|
| T |
4856808 |
aacatgaattatttggatatatcaaacaacaatttgagtggtttgcttccaaaagatattggtatattccttcctagtgttacctatttgaacatttcat |
4856709 |
T |
|
| Q |
101 |
ggaatagctttgaaggaaatata |
123 |
Q |
| |
|
||||||||||||||||||||||| |
|
|
| T |
4856708 |
ggaatagctttgaaggaaatata |
4856686 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 14 - 139
Target Start/End: Original strand, 7142473 - 7142598
Alignment:
| Q |
14 |
tggatatatcaaacaacaatttaagtgggttgctaacaaaagattttgatttattccttccaagtgctacacagttgaacttttcatggaatagctttga |
113 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||| || ||||| ||| | |||||||||| |||| | | |||||||||||| |||||||||| | |
|
|
| T |
7142473 |
tggatatatcaaacaacaatttaagtggtttgcttccagaagatattggtatattccttcctagtgttgactatctgaacttttcattgaatagctttca |
7142572 |
T |
|
| Q |
114 |
aggaaatataccttcatcaattggta |
139 |
Q |
| |
|
|||||||||||||| ||||||||||| |
|
|
| T |
7142573 |
aggaaatataccttaatcaattggta |
7142598 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 159 - 214
Target Start/End: Complemental strand, 4856676 - 4856621
Alignment:
| Q |
159 |
cttggacctctctcataatcatttctcgggtgagttaccaaaacaactggccacag |
214 |
Q |
| |
|
||||||||||||||| ||||||||||| ||||||||||| ||||| ||||||||| |
|
|
| T |
4856676 |
cttggacctctctcagaatcatttctcaggtgagttacctgaacaattggccacag |
4856621 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University