View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6498_high_6 (Length: 409)
Name: NF6498_high_6
Description: NF6498
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6498_high_6 |
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Alignment Details
Target: chr4 (Bit Score: 312; Significance: 1e-176; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 312; E-Value: 1e-176
Query Start/End: Original strand, 11 - 384
Target Start/End: Original strand, 45279893 - 45280290
Alignment:
| Q |
11 |
agattattctcaaactgcaaatatgttataaaaatagcaagtacctttgagcttgttgatgaaaagtttcgccttgtcttcaacactatttgagagagac |
110 |
Q |
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| T |
45279893 |
agattattctcaaactgcaaatatgttataaaaatagcaagtacctttgagcttgttgatgaaaagtttcgccttgtcttcaacactatttgagagagac |
45279992 |
T |
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| Q |
111 |
tgaaattgaaaatagatatataagtattcttgtacataaatttatgtttgcaacaa--------------------aacaaaggttaa----ttaacagt |
186 |
Q |
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| T |
45279993 |
tgaaattgaaaatagatatataagtattcttgtacataaatttatgtttgcaacaaaacaattcgcattaacataaaacaaaggttaattaattaacagt |
45280092 |
T |
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| Q |
187 |
aagagtaaaagttcatactgatcattttggtttatttttcataatgatcattttatatacttccaaggtatataggacataattttgtgactctagtcat |
286 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45280093 |
aagagtaaaagttcatactgatcattttggtttatttttcataatgatcattttatatacttccaaggtatataggacataattttgtgactctagtcat |
45280192 |
T |
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| Q |
287 |
attcaagattccaagaacataagactctgctacttctattatcaaatcttatattcttagtattttagaagtcatttatccaaaatagacataactca |
384 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
45280193 |
attcaagattccaagaacataagactctgctacttctattatcaaatcttatattcttagtattttagaagccatttatccaaaatagacataactca |
45280290 |
T |
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