View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6498_low_11 (Length: 267)
Name: NF6498_low_11
Description: NF6498
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6498_low_11 |
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| [»] scaffold0184 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 229; Significance: 1e-126; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 19 - 255
Target Start/End: Complemental strand, 33383167 - 33382931
Alignment:
| Q |
19 |
ggccaagtaacgataggtaccccagcaactacaccttctaaaactgaattccatccacaatgagtcacaaatgctccaattgcttcgtgttcaagaatca |
118 |
Q |
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||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33383167 |
ggccaagtaacgataggtaccccagcaaccacaccttctaaaactgaattccatccacaatgagtcacaaatgctccaattgcttcgtgttcaagaatca |
33383068 |
T |
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| Q |
119 |
acgtttgcggcgaccaacctcttataattagtccctttccttccattcttttctcaaatccttctggtagccaatcttctccatcttctttgcttctcct |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33383067 |
acgtttgcggcgaccaacctcttataattagtccctttccttccattcttttctcaaatccttctggtagccaatcttctccatcttctttgcttctcct |
33382968 |
T |
|
| Q |
219 |
caccacccaaataaaaaatttcccggatgcttcaagt |
255 |
Q |
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|||||||||||||||||||| |||||||||||||||| |
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| T |
33382967 |
caccacccaaataaaaaattgcccggatgcttcaagt |
33382931 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 19 - 177
Target Start/End: Original strand, 33390887 - 33391045
Alignment:
| Q |
19 |
ggccaagtaacgataggtaccccagcaactacaccttctaaaactgaattccatccacaatgagtcacaaatgctccaattgcttcgtgttcaagaatca |
118 |
Q |
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|||||||||| |||||||| |||||| |||||| ||| ||| | | |||||||||||||||||||||| ||||||||| |||| |||| |||||||| |
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| T |
33390887 |
ggccaagtaatcataggtactccagcagctacactttccaaagttaagttccatccacaatgagtcacaattgctccaatagctttatgttgaagaatca |
33390986 |
T |
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| Q |
119 |
acgtttgcggcgaccaacctcttataattagtccctttccttccattcttttctcaaat |
177 |
Q |
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| T |
33390987 |
aaagttgaggagaccaacctcttataattagtccctttcctttcattcttttctcaaat |
33391045 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 96; Significance: 4e-47; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 19 - 234
Target Start/End: Original strand, 27688654 - 27688869
Alignment:
| Q |
19 |
ggccaagtaacgataggtaccccagcaactacaccttctaaaactgaattccatccacaatgagtcacaaatgctccaattgcttcgtgttcaagaatca |
118 |
Q |
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|||||||||| |||||||| ||||| || || ||||||||||| ||||||||||| ||||| ||||||||||| || |||||||| ||||||||||||| |
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| T |
27688654 |
ggccaagtaatcataggtactccagctaccactccttctaaaaccgaattccatccgcaatgcgtcacaaatgccccgattgcttcatgttcaagaatca |
27688753 |
T |
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| Q |
119 |
acgtttgcggcgaccaacctcttataattagtccctttccttccattcttttctcaaatccttctggtagccaatcttctccatcttctttgcttctcct |
218 |
Q |
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| ||| || ||||||||||||||||||||||| ||||||||| |||||| ||| |||||||| |||||||| || |||||||||||| | | |||| |
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| T |
27688754 |
tcacttgtggagaccaacctcttataattagtccttttccttccgttctttcctcgaatccttcaggtagccattcatctccatcttctgtctgtgtcct |
27688853 |
T |
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| Q |
219 |
caccacccaaataaaa |
234 |
Q |
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||| |||||||||||| |
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| T |
27688854 |
cacaacccaaataaaa |
27688869 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 19 - 177
Target Start/End: Complemental strand, 18989614 - 18989456
Alignment:
| Q |
19 |
ggccaagtaacgataggtaccccagcaactacaccttctaaaactgaattccatccacaatgagtcacaaatgctccaattgcttcgtgttcaagaatca |
118 |
Q |
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|||||||||| |||||||| |||||| | |||| ||| ||| | | |||||||||||||||||||||||||||||||| |||| |||| || ||||| |
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| T |
18989614 |
ggccaagtaatcataggtactccagcagccacactttccaaagttaagttccatccacaatgagtcacaaatgctccaatagctttatgttgaaaaatca |
18989515 |
T |
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| Q |
119 |
acgtttgcggcgaccaacctcttataattagtccctttccttccattcttttctcaaat |
177 |
Q |
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| ||| | | ||||||||||||||||||||| ||||||| |||| ||||||||||| |
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| T |
18989514 |
aaagttgaagaggccaacctcttataattagtccttttcctttcattattttctcaaat |
18989456 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 130 - 177
Target Start/End: Complemental strand, 19001937 - 19001890
Alignment:
| Q |
130 |
gaccaacctcttataattagtccctttccttccattcttttctcaaat |
177 |
Q |
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| T |
19001937 |
gaccaacctcttataattagtccgtttcctttcatccttttctcaaat |
19001890 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0184 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0184
Description:
Target: scaffold0184; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 60 - 100
Target Start/End: Original strand, 11646 - 11686
Alignment:
| Q |
60 |
aactgaattccatccacaatgagtcacaaatgctccaattg |
100 |
Q |
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| T |
11646 |
aactgaattccaaccacaatgagtcaaaaatgcaccaattg |
11686 |
T |
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