View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6498_low_13 (Length: 255)
Name: NF6498_low_13
Description: NF6498
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6498_low_13 |
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Alignment Details
Target: chr2 (Bit Score: 183; Significance: 4e-99; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 183; E-Value: 4e-99
Query Start/End: Original strand, 1 - 239
Target Start/End: Complemental strand, 14396655 - 14396427
Alignment:
| Q |
1 |
tgttacagatgttttgagtttcagagcacatagtatagtgcagactatatttcctgataattggccggatagaaagattcgaagatttagtacacttact |
100 |
Q |
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| T |
14396655 |
tgttacagatgttttgagtttcagagcacatagt-----gcagactatatttcctgataattggccggatagaaagattcgaagatttaatacacttact |
14396561 |
T |
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| Q |
101 |
ttatattataccatacagtattggaatgtgtgtgccgagccaagaagaaggagcccgaaacactacatgaaatactaacttctgatatcttccatagatg |
200 |
Q |
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| T |
14396560 |
ttatactatac-----agtattggaatgtgtgtgccgagccgagaagaaggagcccgaaacaatacatgaaatactaacttctgatatcttccatagatg |
14396466 |
T |
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| Q |
201 |
tttgcttgcatgtgctgctgctgatcaagtactccaaat |
239 |
Q |
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| T |
14396465 |
tttgcttgcatgtgctgctgctgatcaagtactccaaat |
14396427 |
T |
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