View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6498_low_2 (Length: 538)
Name: NF6498_low_2
Description: NF6498
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6498_low_2 |
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Alignment Details
Target: chr3 (Bit Score: 490; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 490; E-Value: 0
Query Start/End: Original strand, 20 - 529
Target Start/End: Complemental strand, 44055004 - 44054495
Alignment:
| Q |
20 |
cagcccttgtcagcagtttccccttactccacaatgcacgaagatatctgcaatttagcagaagacaagcgcgtatctctaataatcgttccatttcata |
119 |
Q |
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| T |
44055004 |
cagcccttgtcagcagtttccccttactccacaatgcacgaagatatctgcaatttagcagaagacaagcgcgtatctctaataatcgttccatttcata |
44054905 |
T |
|
| Q |
120 |
aacaacaaacagtcgatggtgcaatggaagcaacaaacatggcatttcaaaccatcaaccaaaatgtactagcaaatgcaccttgctcggtcggaattct |
219 |
Q |
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| T |
44054904 |
aacaacaaacagtcgatggtgcaatggaagcaacaaacatggcatttcgaaccatcaaccaaaatgtactagcaaatgcaccttgctcggtcggaattct |
44054805 |
T |
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| Q |
220 |
agtcgatagaggcttaagcggttcgaaccggttagcctcggatcaagtatcacatcatgtagcagtgatgttttttggtggaccggacgacagagaagca |
319 |
Q |
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| T |
44054804 |
agtcgatagaggcttaagcggttcgaaccggttagcctcggatcaagtatcacatcatgtagcagtgatgttttttggtggaccggacgacagagaagca |
44054705 |
T |
|
| Q |
320 |
ttatgctatggatggagaatgttggaacatagcagtacaagcctaacaataatgcgcttcgtcccgggtgaaagagtaagtgaaccggttcgacaacaac |
419 |
Q |
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| T |
44054704 |
ttatgctatggatggagaatgttggaacatagcggtacaagcctaacaataatgcgcttcgtcccgggcgaaagagtaagtgaaccggttcgacaacaac |
44054605 |
T |
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| Q |
420 |
atagactcaattcagatgaaccaagtgttttaacagttgaaacagatatagaaaaacaacttgatgataaactaatacatgggtttagaacgaaatatgg |
519 |
Q |
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| T |
44054604 |
atagactcaattcagatgaaccaagtgttttaacagttgaaacagatatagaaaaacaacttgatgataaactaatacatgagtttaggacgaaatatgg |
44054505 |
T |
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| Q |
520 |
aaatgatgat |
529 |
Q |
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|||||||||| |
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| T |
44054504 |
aaatgatgat |
44054495 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 88; Significance: 5e-42; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 88; E-Value: 5e-42
Query Start/End: Original strand, 38 - 349
Target Start/End: Complemental strand, 39236858 - 39236547
Alignment:
| Q |
38 |
tccccttactccacaatgcacgaagatatctgcaatttagcagaagacaagcgcgtatctctaataatcgttccatttcataaacaacaaacagtcgatg |
137 |
Q |
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||||||||||| |||||||| |||||||| |||| |||||| ||||| ||||| || | | |||||| | || |||||||| ||||||||||| |||| |
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| T |
39236858 |
tccccttactctacaatgcatgaagatatatgcactttagccgaagaaaagcgtgtcgcctttataatcatcccttttcataagcaacaaacagttgatg |
39236759 |
T |
|
| Q |
138 |
gtgcaatggaagcaacaaacatggcatttcaaaccatcaaccaaaatgtactagcaaatgcaccttgctcggtcggaattctagtcgatagaggcttaag |
237 |
Q |
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| | ||||||| |||||||||||||||||| ||| | |||||||||||| |||| ||| | ||||| ||||| ||||||||||| ||||||||||||| |
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| T |
39236758 |
gcggaatggaatcaacaaacatggcatttcgaactgttaaccaaaatgtattagcgaattcgccttgttcggttggaattctagtagatagaggcttaaa |
39236659 |
T |
|
| Q |
238 |
cggttcgaaccggttagcctcggatcaagtatcacatcatgtagcagtgatgttttttggtggaccggacgacagagaagcattatgctatggatggaga |
337 |
Q |
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|||| ||||| || | |||||| | || |||||| ||||||| |||||||||| ||||| || || |||||||||||| | ||||| |||||| |
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| T |
39236658 |
tagttcaaaccgtctaatagctgatcaaatgtctcatcatatagcagttttgttttttggaggaccagatgatagagaagcattaagttatggttggaga |
39236559 |
T |
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| Q |
338 |
atgttggaacat |
349 |
Q |
| |
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|||| ||||||| |
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| T |
39236558 |
atgtcggaacat |
39236547 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 34; Significance: 0.0000000008; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 200 - 341
Target Start/End: Original strand, 2812867 - 2813008
Alignment:
| Q |
200 |
ccttgctcggtcggaattctagtcgatagaggcttaagcggttcgaaccggttagcctcggatcaagtatcacatcatgtagcagtgatgttttttggtg |
299 |
Q |
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||||| ||||| || |||||||||||||||||| ||| ||| || | ||||||| | | ||||| ||| ||||| || || ||| | || || |||| |
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| T |
2812867 |
ccttgttcggttgggattctagtcgatagaggcctaaacggatccagccggttaactgcaagtcaagcatctcatcaggtggctgtgctattcttcggtg |
2812966 |
T |
|
| Q |
300 |
gaccggacgacagagaagcattatgctatggatggagaatgt |
341 |
Q |
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||||||| || || |||||||||| ||||||||||||||||| |
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| T |
2812967 |
gaccggatgatagggaagcattatcctatggatggagaatgt |
2813008 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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