View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6498_low_3 (Length: 472)
Name: NF6498_low_3
Description: NF6498
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6498_low_3 |
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Alignment Details
Target: chr4 (Bit Score: 280; Significance: 1e-156; HSPs: 10)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 280; E-Value: 1e-156
Query Start/End: Original strand, 9 - 453
Target Start/End: Complemental strand, 5159757 - 5159319
Alignment:
| Q |
9 |
gacatcatcataaaaatcttaaagtttttccaatggcgtcaatatatacatcaa----cttatttcattgtttttgttaattatttaaaatgtaaaatca |
104 |
Q |
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||||| ||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||| |||||||| |
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| T |
5159757 |
gacattatcataaaaatcttaaagtttttccaatggcgtcaatatatacattaattaacttatttcattgtttttgttaattatttaaaatttaaaatca |
5159658 |
T |
|
| Q |
105 |
ataaaaaagttatcttcattgtaacaatccatccccaaaaccatcccgtgaagcagttatgaattaattatttgtgtttggtagtattcataccttgaat |
204 |
Q |
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||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
5159657 |
ataaaaaagttatcttcattgtaacaatccatccc------------gtgaagcagttatgaattaattatttgtgtttggtagtattcataccttcaat |
5159570 |
T |
|
| Q |
205 |
tgagccgttcatttgattatagcttaaagttaacattttcaagtttttcaaatgttgaacatctgcag-nnnnnnnngagagtacatagttagagatata |
303 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
5159569 |
tgagccgttcatttgattatagcttaaagttaacattttcaagtttttcaaatgttgaacatctgcagaaaaaaaaagagagtacatagttagagatata |
5159470 |
T |
|
| Q |
304 |
attttcaataaataaatctgtaagaactattcccc-nnnnnnntttacaaattatgtttgactatttaaaaaatttcaag-nnnnnnngagtgcatatga |
401 |
Q |
| |
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| T |
5159469 |
a-tttcaataaataaatctgtaagaactattccccaaaaaaaatttacaaattatgtttgactatttaaaaaatttcaagttttttttgagtgcatatga |
5159371 |
T |
|
| Q |
402 |
caaaacaagaagatgaagtctcaaattcttggagaatcctagatgacaaatt |
453 |
Q |
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| T |
5159370 |
caaaacaagaagatgaagtctcaaattcttggagaatcctagatgacaaatt |
5159319 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 213; E-Value: 1e-116
Query Start/End: Original strand, 9 - 338
Target Start/End: Complemental strand, 5195403 - 5195065
Alignment:
| Q |
9 |
gacatcatcataaaaatcttaaa-gtttttccaatggcgtcaatatatacatcaa----cttatttcattgtttttgttaattatttaaaatgtaaaatc |
103 |
Q |
| |
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||||| ||||||||||||||||| |||||||||||||||||||||||||||| || |||||||| |||||||||||||||||||||||| |||||| |
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| T |
5195403 |
gacattatcataaaaatcttaaaagtttttccaatggcgtcaatatatacattaattaacttatttcgttgtttttgttaattatttaaaatttaaaata |
5195304 |
T |
|
| Q |
104 |
aataaaaaagttatcttcattgtaacaatccatccccaaaaccatcccgtgaagcagttatgaattaattatttgtgtttggtagtattcataccttgaa |
203 |
Q |
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|| ||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||| || |
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| T |
5195303 |
aaaaaaaaagttatcttcattgtaacaatcgatccccaaaaccatcccgtgaagcaattatgaattaattatttgtgtttggtagtattgataccttcaa |
5195204 |
T |
|
| Q |
204 |
ttgagccgttcatttgattatagcttaaagttaacattttcaagtttttcaaatgttgaacatctgcag----nnnnnnnngagagtacatagttagaga |
299 |
Q |
| |
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||||||||||||||||||||| | ||||| ||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
5195203 |
ttgagccgttcatttgattatcgtttaaacttaacattttcaaatttttcaaatgttgaacatctgcagaagaaaaaaaaagagagtacatagttagaga |
5195104 |
T |
|
| Q |
300 |
tataattttcaataaataaatctgtaagaactattcccc |
338 |
Q |
| |
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|||||||||||||||||||||| |||||||||||||||| |
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| T |
5195103 |
tataattttcaataaataaatcggtaagaactattcccc |
5195065 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 203; E-Value: 1e-110
Query Start/End: Original strand, 9 - 299
Target Start/End: Complemental strand, 5182005 - 5181710
Alignment:
| Q |
9 |
gacatcatcataaaaatcttaaa-gtttttccaatggcgtcaatatatacatcaa----cttatttcattgtttttgttaattatttaaaatgtaaaatc |
103 |
Q |
| |
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||||| ||||||||||||||||| |||||||||||||||||||||||||||| || ||||||||||| ||||||||||||||||||||| ||||||| |
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| T |
5182005 |
gacattatcataaaaatcttaaaagtttttccaatggcgtcaatatatacattaattaacttatttcattctttttgttaattatttaaaatttaaaatc |
5181906 |
T |
|
| Q |
104 |
aataaaaaagttatcttcattgtaacaatccatccccaaaaccatcccgtgaagcagttatgaattaattatttgtgtttggtagtattcataccttgaa |
203 |
Q |
| |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||| || |
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| T |
5181905 |
aatataaaagttatcttcattgtaacaatccatccccaaaaccatcccgtgaagcaattatgaattaattatttgtgtttggtagtattgataccttcaa |
5181806 |
T |
|
| Q |
204 |
ttgagccgttcatttgattatagcttaaagttaacattttcaagtttttcaaatgttgaacatctgcagnnnnnnnngagagtacatagttagaga |
299 |
Q |
| |
|
||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
5181805 |
ttgagccgttcatttgattatttcttaaacttaacattttcaagtttttcaaatgttgaacatctgcaggaaaaaaagagagtacatagttagaga |
5181710 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 166 - 271
Target Start/End: Complemental strand, 5172594 - 5172489
Alignment:
| Q |
166 |
aattaattatttgtgtttggtagtattcataccttgaattgagccgttcatttgattatagcttaaagttaacattttcaagtttttcaaatgttgaaca |
265 |
Q |
| |
|
|||||||||||| |||||| ||||||| ||||||| ||||||||||||||||||||||||||||||| ||||||||||||| |||||||| ||||||||| |
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| T |
5172594 |
aattaattatttatgtttgatagtattgataccttcaattgagccgttcatttgattatagcttaaacttaacattttcaattttttcaagtgttgaaca |
5172495 |
T |
|
| Q |
266 |
tctgca |
271 |
Q |
| |
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|||||| |
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| T |
5172494 |
tctgca |
5172489 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 74; E-Value: 9e-34
Query Start/End: Original strand, 166 - 271
Target Start/End: Original strand, 4843028 - 4843133
Alignment:
| Q |
166 |
aattaattatttgtgtttggtagtattcataccttgaattgagccgttcatttgattatagcttaaagttaacattttcaagtttttcaaatgttgaaca |
265 |
Q |
| |
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|||||||||||| |||||| ||||||| ||||||| ||||||||| ||||||||||||| |||||| |||||||||||||||||||||||||||||||| |
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| T |
4843028 |
aattaattatttatgtttgatagtattgataccttcaattgagcccttcatttgattatcgcttaaccttaacattttcaagtttttcaaatgttgaaca |
4843127 |
T |
|
| Q |
266 |
tctgca |
271 |
Q |
| |
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|||||| |
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| T |
4843128 |
tctgca |
4843133 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 171 - 270
Target Start/End: Complemental strand, 5212815 - 5212716
Alignment:
| Q |
171 |
attatttgtgtttggtagtattcataccttgaattgagccgttcatttgattatagcttaaagttaacattttcaagtttttcaaatgttgaacatctgc |
270 |
Q |
| |
|
||||||||||||||||| |||| ||||||| || |||||||||||||||||| | || |||| ||| ||||||||||||| ||||||||||||||||||| |
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|
| T |
5212815 |
attatttgtgtttggtaatattaataccttcaagtgagccgttcatttgattgttgcataaacttagcattttcaagtttctcaaatgttgaacatctgc |
5212716 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 392 - 453
Target Start/End: Complemental strand, 5181608 - 5181547
Alignment:
| Q |
392 |
gtgcatatgacaaaacaagaagatgaagtctcaaattcttggagaatcctagatgacaaatt |
453 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||| |
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| T |
5181608 |
gtgcatatgacaaaacaagaagatgaaatctcaaattcttggagaatcctagatgagaaatt |
5181547 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 10 - 84
Target Start/End: Original strand, 4842849 - 4842927
Alignment:
| Q |
10 |
acatcatcataaaaatcttaaagtttttccaatggcgtcaatatatacatca----acttatttcattgtttttgttaa |
84 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||| |||||||||| || | ||||||||||||||||||||||| |
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| T |
4842849 |
acattatcataaaaatcttaaagtttttccaatggactcaatatataaattaatttacttatttcattgtttttgttaa |
4842927 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 9 - 56
Target Start/End: Complemental strand, 5172677 - 5172630
Alignment:
| Q |
9 |
gacatcatcataaaaatcttaaagtttttccaatggcgtcaatatata |
56 |
Q |
| |
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||||| |||||||||||||||||||||||||||||| |||||||||| |
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|
| T |
5172677 |
gacattatcataaaaatcttaaagtttttccaatggactcaatatata |
5172630 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 282 - 316
Target Start/End: Original strand, 4843149 - 4843183
Alignment:
| Q |
282 |
agagtacatagttagagatataattttcaataaat |
316 |
Q |
| |
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|||||||||||||||||||||||| |||||||||| |
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| T |
4843149 |
agagtacatagttagagatataatattcaataaat |
4843183 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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