View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6498_low_4 (Length: 453)
Name: NF6498_low_4
Description: NF6498
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6498_low_4 |
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Alignment Details
Target: chr8 (Bit Score: 380; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 380; E-Value: 0
Query Start/End: Original strand, 23 - 441
Target Start/End: Original strand, 5464925 - 5465341
Alignment:
| Q |
23 |
tataaatagttagtttattagattaatatttactcgtttgtccagattaaaatgcataacctccaactcattttcgctttgctcaaaccattgaagttac |
122 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||| | ||||||||||||||| |||||||||||||| |||||||||||| ||||||||||| |
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| T |
5464925 |
tataaatagttaatttattagattaatatttactcgtttgtctatattaaaatgcataacttccaactcattttcactttgctcaaacaattgaagttac |
5465024 |
T |
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| Q |
123 |
tcatccctttttccttgacaattaatcaaatcatgccaaatagtcaaaactacaaccatgaaagactaacaaatttcgctacttctaacacctcatcaaa |
222 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5465025 |
tcatccctttttccttgacaattaatcaaatcatgccaaatagtcaa--ctacaaccatgaaagactaacaaatttcgctacttctaacacctcatcaaa |
5465122 |
T |
|
| Q |
223 |
acttctaacaaacttaaagtgtaaaatgatgacacacaatgcttcttgaaattagctattaggtaaacccaaaacaaagtaaaattgaagactccaagta |
322 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
5465123 |
acttctaacaaacttaaagtgtaaaatgatgacacacaatgcttcttgaaattagctattaggtaaacccaaaacaaagtaaaattgaagactcaaagta |
5465222 |
T |
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| Q |
323 |
ctgacttaaaatgttgtaacaaggcttattgttgttatttttcaatccaaaaaccaaaagaaacttatgttgttattttcaatccacactttcatacatt |
422 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5465223 |
ctgacttaaaatgttgtaacaaggcttattgttgttatttttcaatccaaaaaccaaaagaaacttatgttgttattttcaatccacactttcatacatt |
5465322 |
T |
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| Q |
423 |
cagatcattggtggtgatg |
441 |
Q |
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| T |
5465323 |
cagatcattggtggtgatg |
5465341 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 21 - 57
Target Start/End: Complemental strand, 44075032 - 44074996
Alignment:
| Q |
21 |
aatataaatagttagtttattagattaatatttactc |
57 |
Q |
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||||| |||||||| |||||||||||||||||||||| |
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| T |
44075032 |
aatattaatagttaatttattagattaatatttactc |
44074996 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 27 - 63
Target Start/End: Complemental strand, 32084752 - 32084716
Alignment:
| Q |
27 |
aatagttagtttattagattaatatttactcgtttgt |
63 |
Q |
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| T |
32084752 |
aatagttagtttattagattaatatttattcatttgt |
32084716 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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