View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6498_low_5 (Length: 436)
Name: NF6498_low_5
Description: NF6498
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6498_low_5 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 189; Significance: 1e-102; HSPs: 15)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 198 - 425
Target Start/End: Original strand, 5159986 - 5160214
Alignment:
| Q |
198 |
tggaaattacatgcaaggatcattttcattgagcactttggctaatcatttcaatcttcgggttctatatatttcatcgaaaaacagcactggagtacac |
297 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||| ||||||| | ||||||| || |
|
|
| T |
5159986 |
tggaaattacatgcaaggatcattttcattgagcactttggctaatcattccaatcttgaggttctatatatttcatcaaaaaacaatattggagtagac |
5160085 |
T |
|
| Q |
298 |
attgaaactgaaaaaacaa-gtggtttcctaaatttcaattgaagtcactcattcttagaaattgcaacctaaacaaggacaaaggaagtgtcattccta |
396 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5160086 |
attgaaactgaaaaaacaaagtggtttcctaaatttcaattgaagtcactcattcttagaaattgcaacctaaacaaggacaaaggaagtgtcattccta |
5160185 |
T |
|
| Q |
397 |
cttttctttcttatcaatacaatttgatg |
425 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
5160186 |
cttttctttcttatcaatacaatttgatg |
5160214 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 169; E-Value: 2e-90
Query Start/End: Original strand, 201 - 424
Target Start/End: Original strand, 5172905 - 5173129
Alignment:
| Q |
201 |
aaattacatgcaaggatcattttcattgagcactttggctaatcatttcaatcttcgggttctatatatttcatcgaaaaacagcactggagtacacatt |
300 |
Q |
| |
|
||||||||||||||||||||||||| | | || |||||||||||| | |||||||| | |||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
5172905 |
aaattacatgcaaggatcattttcacttatcattttggctaatcactccaatcttcagcatctacatatttcatcgaaaaacagcactggagtacacatt |
5173004 |
T |
|
| Q |
301 |
gaaactgaaaaaacaa-gtggtttcctaaatttcaattgaagtcactcattcttagaaattgcaacctaaacaaggacaaaggaagtgtcattcctactt |
399 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5173005 |
gaaactgaaaaaacaaagtggtttcctaaatttcaattgaagtccctcattcttagaaattgcaacctaaacaaggacaaaggaagtgtcattcctactt |
5173104 |
T |
|
| Q |
400 |
ttctttcttatcaatacaatttgat |
424 |
Q |
| |
|
|||||||||||||||| |||||||| |
|
|
| T |
5173105 |
ttctttcttatcaatataatttgat |
5173129 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 166; E-Value: 1e-88
Query Start/End: Original strand, 198 - 422
Target Start/End: Original strand, 5195628 - 5195853
Alignment:
| Q |
198 |
tggaaattacatgcaaggatcattttcattgagcactttggctaatcatttcaatcttcgggttctatatatttcatcgaaaaacagcactggagtacac |
297 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||| ||||||| | ||||||| || |
|
|
| T |
5195628 |
tggaaattacatgcaaggatcattttcattgagcactttggctaatcattccaatcttgaggttctatatatttcatcaaaaaacaatattggagtagac |
5195727 |
T |
|
| Q |
298 |
attgaaactgaaaaaacaa-gtggtttcctaaatttcaattgaagtcactcattcttagaaattgcaacctaaacaaggacaaaggaagtgtcattccta |
396 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
5195728 |
attgaaactgaaaaaacaaagtggtttcctaaatttcaattgaagtcacttattgttagaaattgcaacctaaacaaggacgaaggaagtgtcattccta |
5195827 |
T |
|
| Q |
397 |
cttttctttcttatcaatacaatttg |
422 |
Q |
| |
|
|||||||||| |||||||| |||||| |
|
|
| T |
5195828 |
cttttctttcatatcaatataatttg |
5195853 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 149; E-Value: 1e-78
Query Start/End: Original strand, 201 - 424
Target Start/End: Complemental strand, 4842620 - 4842396
Alignment:
| Q |
201 |
aaattacatgcaaggatcattttcattgagcactttggctaatcatttcaatcttcgggttctatatatttcatcgaaaaacagcactggagtacacatt |
300 |
Q |
| |
|
||||||||||||||||||||||||| | | || |||||||||||| | |||||||| | ||||||||||||||| |||||||| | ||||||||||||| |
|
|
| T |
4842620 |
aaattacatgcaaggatcattttcacttatcaatttggctaatcactccaatcttcagcatctatatatttcatctaaaaacagtattggagtacacatt |
4842521 |
T |
|
| Q |
301 |
gaaactgaaaaaacaa-gtggtttcctaaatttcaattgaagtcactcattcttagaaattgcaacctaaacaaggacaaaggaagtgtcattcctactt |
399 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||| | | |||||||||||||||||||||| |
|
|
| T |
4842520 |
gaaactgaaaaaacaaagtggtttcctaaatttcaattgaagtccctcattcttagaaattgcaacctaaacatgaagaaaggaagtgtcattcctactt |
4842421 |
T |
|
| Q |
400 |
ttctttcttatcaatacaatttgat |
424 |
Q |
| |
|
|||||||||||||||| |||||||| |
|
|
| T |
4842420 |
ttctttcttatcaatataatttgat |
4842396 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 145; E-Value: 4e-76
Query Start/End: Original strand, 1 - 205
Target Start/End: Original strand, 5172648 - 5172852
Alignment:
| Q |
1 |
gaaaaactttaagatttttatgataatgtcaatttttgtaaagatgacaggacatagttaattatgacaggattatgcaatttgaaggatttggaagaac |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||| ||||||||||||||||||||| ||||| |
|
|
| T |
5172648 |
gaaaaactttaagatttttatgataatgtcaatttttgtaaagataactggacatagttaattatgacaggactatgcaatttgaaggatttggtagaac |
5172747 |
T |
|
| Q |
101 |
tagatatcaactataacatgtttggtgctaaacttcctgagtgtttaagcaacttaacaaacctcagacttcttgatcttagcgataatttgttcagtgg |
200 |
Q |
| |
|
| ||||||| | | ||||||||||| ||||||||||||||||||||||| |||||||||||||||||| ||||||| |||||| ||||| | |||||||| |
|
|
| T |
5172748 |
tggatatcagcaaaaacatgtttggggctaaacttcctgagtgtttaagtaacttaacaaacctcagaattcttgaccttagccataatctattcagtgg |
5172847 |
T |
|
| Q |
201 |
aaatt |
205 |
Q |
| |
|
||||| |
|
|
| T |
5172848 |
aaatt |
5172852 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 141; E-Value: 9e-74
Query Start/End: Original strand, 1 - 205
Target Start/End: Complemental strand, 4842877 - 4842673
Alignment:
| Q |
1 |
gaaaaactttaagatttttatgataatgtcaatttttgtaaagatgacaggacatagttaattatgacaggattatgcaatttgaaggatttggaagaac |
100 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||| ||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
4842877 |
gaaaaactttaagatttttatgataatgttaattttttgaaagatgaccggacatagttaattatgacaggactatgcaatttgaaggatttggaagaac |
4842778 |
T |
|
| Q |
101 |
tagatatcaactataacatgtttggtgctaaacttcctgagtgtttaagcaacttaacaaacctcagacttcttgatcttagcgataatttgttcagtgg |
200 |
Q |
| |
|
| ||||||| | | ||||||||||| ||||||||||||||||||||||| |||||||||||||||||| ||||||| |||||| ||||| ||||| |||| |
|
|
| T |
4842777 |
tggatatcagcaaaaacatgtttggggctaaacttcctgagtgtttaagtaacttaacaaacctcagaattcttgaccttagccataatctgttcggtgg |
4842678 |
T |
|
| Q |
201 |
aaatt |
205 |
Q |
| |
|
||||| |
|
|
| T |
4842677 |
aaatt |
4842673 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 138; E-Value: 5e-72
Query Start/End: Original strand, 1 - 203
Target Start/End: Original strand, 5159728 - 5159934
Alignment:
| Q |
1 |
gaaaaactttaagatttttatgataatgtcaatttttgtaaagatgacaggacatagttaa----ttatgacaggattatgcaatttgaaggatttggaa |
96 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||| | |
|
|
| T |
5159728 |
gaaaaactttaagatttttatgataatgtcaatttttgtaaagatgacaggacatagttaattaattatgacaggactatgcaatttgaaggatttggta |
5159827 |
T |
|
| Q |
97 |
gaactagatatcaactataacatgtttggtgctaaacttcctgagtgtttaagcaacttaacaaacctcagacttcttgatcttagcgataatttgttca |
196 |
Q |
| |
|
||||| ||||||| | | ||||||||| |||||||| ||||||||||||||||||||||||||||||||||| ||||||| ||||| ||||| |||||| |
|
|
| T |
5159828 |
gaactggatatcagccagaacatgtttagtgctaaatttcctgagtgtttaagcaacttaacaaacctcagagttcttgaacttagtaataatctgttca |
5159927 |
T |
|
| Q |
197 |
gtggaaa |
203 |
Q |
| |
|
||||||| |
|
|
| T |
5159928 |
gtggaaa |
5159934 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 138; E-Value: 5e-72
Query Start/End: Original strand, 198 - 424
Target Start/End: Original strand, 5182234 - 5182458
Alignment:
| Q |
198 |
tggaaattacatgcaaggatcattttcattgagcactttggctaatcatttcaatcttcgggttctatatatttcatcgaaaaacagcactggagtacac |
297 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| | ||||||| | ||||||||||||| || ||||||| |||||| | | |
|
|
| T |
5182234 |
tggaaattacatgcaaggatcattttcattgagcactttggctaatcactcaaatcttcagcatctatatatttcaccggaaaacag---tggagttctc |
5182330 |
T |
|
| Q |
298 |
attgaaactgaaaaaacaa-gtggtttcctaaatttcaattgaagtcactcattcttagaaattgcaacctaaacaaggacaaaggaagtgtcattccta |
396 |
Q |
| |
|
|||||||||||||| |||| ||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||| |||||| |||||||||||| |
|
|
| T |
5182331 |
attgaaactgaaaagacaaagtggtttcccaaatttcaattgaagacactcattcttagaaattgcaacctaaacaaggagaaaggaggtgtcattccta |
5182430 |
T |
|
| Q |
397 |
cttttctttcttatcaatacaatttgat |
424 |
Q |
| |
|
|||||||||| |||||||| |||||||| |
|
|
| T |
5182431 |
cttttctttcatatcaatataatttgat |
5182458 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 138; E-Value: 5e-72
Query Start/End: Original strand, 8 - 205
Target Start/End: Original strand, 5195381 - 5195578
Alignment:
| Q |
8 |
tttaagatttttatgataatgtcaatttttgtaaagatgacaggacatagttaattatgacaggattatgcaatttgaaggatttggaagaactagatat |
107 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||| |||||| ||||| |
|
|
| T |
5195381 |
tttaagatttttatgataatgtcaatttttgtaaagatgacaggacatagttaattatgacaggactatgcaattttaaggatttggtagaactggatat |
5195480 |
T |
|
| Q |
108 |
caactataacatgtttggtgctaaacttcctgagtgtttaagcaacttaacaaacctcagacttcttgatcttagcgataatttgttcagtggaaatt |
205 |
Q |
| |
|
|| | | ||||||||| ||||||||||||| || ||||||||||||||||||||||||||| ||||||| ||||| ||||| ||||||||||||||| |
|
|
| T |
5195481 |
cagcaaaaacatgtttagtgctaaacttccagattgtttaagcaacttaacaaacctcagagttcttgaacttagtaataatctgttcagtggaaatt |
5195578 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #10
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 198 - 422
Target Start/End: Complemental strand, 4857097 - 4856875
Alignment:
| Q |
198 |
tggaaattacatgcaaggatcattttcattgagcactttggctaatcatttcaatcttcgggttctatatatttcatcgaaaaacagcactggagtacac |
297 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||| | ||||||| | ||||||||||||| || ||||||| |||||| | | |
|
|
| T |
4857097 |
tggaaattacatgcaaggatcattttcattgaccactttggctaatcactcaaatcttcagcatctatatatttcaccggaaaacag---tggagttctc |
4857001 |
T |
|
| Q |
298 |
attgaaactgaaaaaacaa-gtggtttcctaaatttcaattgaagtcactcattcttagaaattgcaacctaaacaaggacaaaggaagtgtcattccta |
396 |
Q |
| |
|
|||||||||||||| |||| ||||||||| ||||||||||||||| |||||||||||||||||||||||||||||| |||| |||||||||||||||||| |
|
|
| T |
4857000 |
attgaaactgaaaagacaaagtggtttcccaaatttcaattgaagacactcattcttagaaattgcaacctaaacatggacgaaggaagtgtcattccta |
4856901 |
T |
|
| Q |
397 |
cttttctttcttatcaatacaatttg |
422 |
Q |
| |
|
|||||||||| |||||||| |||||| |
|
|
| T |
4856900 |
cttttctttcatatcaatataatttg |
4856875 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #11
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 8 - 205
Target Start/End: Original strand, 5181983 - 5182184
Alignment:
| Q |
8 |
tttaagatttttatgataatgtcaatttttgtaaagatgacaggacatagttaa----ttatgacaggattatgcaatttgaaggatttggaagaactag |
103 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||| ||||||||||||||||||||| |||| | | |
|
|
| T |
5181983 |
tttaagatttttatgataatgtcaatttttgtatagatgacaggacatagttaattaattatgacaggactatgcaatttgaaggatttggtagaattgg |
5182082 |
T |
|
| Q |
104 |
atatcaactataacatgtttggtgctaaacttcctgagtgtttaagcaacttaacaaacctcagacttcttgatcttagcgataatttgttcagtggaaa |
203 |
Q |
| |
|
|||||| ||||||||||||| ||||||||||||| |||||||||||||||||||||||||| ||| ||||||| ||||| ||||| ||||||||||||| |
|
|
| T |
5182083 |
atatcagctataacatgtttagtgctaaacttccagagtgtttaagcaacttaacaaaccttagagttcttgaacttagtaataatctgttcagtggaaa |
5182182 |
T |
|
| Q |
204 |
tt |
205 |
Q |
| |
|
|| |
|
|
| T |
5182183 |
tt |
5182184 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #12
Raw Score: 126; E-Value: 8e-65
Query Start/End: Original strand, 198 - 424
Target Start/End: Original strand, 5213794 - 5214018
Alignment:
| Q |
198 |
tggaaattacatgcaaggatcattttcattgagcactttggctaatcatttcaatcttcgggttctatatatttcatcgaaaaacagcactggagtacac |
297 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| | |||||| | | ||||||||||||||| ||| ||| ||| | | || |
|
|
| T |
5213794 |
tggaaattacatgcaaggatcattttcattgagcactttggctaatcactccaatctccagcatctatatatttcatcacaaa---gcattggtgcaaac |
5213890 |
T |
|
| Q |
298 |
attgaaactgaaaaaacaa-gtggtttcctaaatttcaattgaagtcactcattcttagaaattgcaacctaaacaaggacaaaggaagtgtcattccta |
396 |
Q |
| |
|
|||||||||||||| |||| |||||| || ||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
5213891 |
attgaaactgaaaagacaaagtggttacccaaatttcaattgaagacactcattcttagaaattgcaacttaaacaaggacaaaggaagtgtcattccta |
5213990 |
T |
|
| Q |
397 |
cttttctttcttatcaatacaatttgat |
424 |
Q |
| |
|
|||||||||| |||||||| | |||||| |
|
|
| T |
5213991 |
cttttctttcatatcaatatagtttgat |
5214018 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #13
Raw Score: 79; E-Value: 9e-37
Query Start/End: Original strand, 63 - 205
Target Start/End: Original strand, 5213602 - 5213744
Alignment:
| Q |
63 |
tatgacaggattatgcaatttgaaggatttggaagaactagatatcaactataacatgtttggtgctaaacttcctgagtgtttaagcaacttaacaaac |
162 |
Q |
| |
|
|||||||||| ||||||| ||||||||||||| ||| |||||||||| ||||||||||||| | || ||||||| |||||||||||||||||||||||| |
|
|
| T |
5213602 |
tatgacaggactatgcaaattgaaggatttggtagagctagatatcagctataacatgtttagcgcgcaacttcccgagtgtttaagcaacttaacaaac |
5213701 |
T |
|
| Q |
163 |
ctcagacttcttgatcttagcgataatttgttcagtggaaatt |
205 |
Q |
| |
|
|| | ||||||| |||||| ||||||||||||||||||||| |
|
|
| T |
5213702 |
ctgaatgttcttgaacttagctataatttgttcagtggaaatt |
5213744 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #14
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 288 - 422
Target Start/End: Original strand, 7142256 - 7142390
Alignment:
| Q |
288 |
tggagtacacattgaaactgaaaaaacaa-gtggtttcctaaatttcaattgaagtcactcattcttagaaattgcaacctaaacaaggacaaaggaagt |
386 |
Q |
| |
|
|||||||||| ||||||||||||| |||| ||||||||||| ||||||| | | |||| || ||| ||||||||||| ||||| ||||||||||| | |
|
|
| T |
7142256 |
tggagtacacgttgaaactgaaaatacaaagtggtttcctagatttcaactacatacacttatg-ttaaaaattgcaaccaaaacatggacaaaggaaat |
7142354 |
T |
|
| Q |
387 |
gtcattcctacttttctttcttatcaatacaatttg |
422 |
Q |
| |
|
|||||||||| |||| |||| |||||| | |||||| |
|
|
| T |
7142355 |
gtcattcctagttttttttcatatcaacataatttg |
7142390 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #15
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 201 - 316
Target Start/End: Original strand, 5202773 - 5202885
Alignment:
| Q |
201 |
aaattacatgcaaggatcattttcattgagcactttggctaatcatttcaatcttcgggttctatatatttcatcgaaaaacagcactggagtacacatt |
300 |
Q |
| |
|
|||| ||| ||||||| |||||||| | ||||||||||||||||| |||| |||| || |||||||||||| || | | |||| ||||| ||||||| |
|
|
| T |
5202773 |
aaatcacacgcaaggaccattttcagtaagcactttggctaatcacttcacgcttcaggatctatatatttcctc---agaaagcattggagaacacatt |
5202869 |
T |
|
| Q |
301 |
gaaactgaaaaaacaa |
316 |
Q |
| |
|
|||||| ||||||||| |
|
|
| T |
5202870 |
gaaacttaaaaaacaa |
5202885 |
T |
|
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