View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6499_high_1 (Length: 596)

Name: NF6499_high_1
Description: NF6499
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6499_high_1
NF6499_high_1
[»] chr6 (3 HSPs)
chr6 (1-588)||(34216645-34217240)
chr6 (303-358)||(31437549-31437604)
chr6 (411-445)||(14385448-14385482)
[»] chr3 (2 HSPs)
chr3 (310-539)||(21093356-21093584)
chr3 (487-538)||(14679836-14679887)
[»] chr7 (3 HSPs)
chr7 (233-405)||(11482726-11482906)
chr7 (458-539)||(11482902-11482983)
chr7 (144-208)||(11482645-11482709)
[»] chr8 (4 HSPs)
chr8 (70-145)||(14621911-14621986)
chr8 (4-41)||(9684711-9684748)
chr8 (411-445)||(17271738-17271772)
chr8 (410-446)||(45270546-45270582)
[»] chr4 (2 HSPs)
chr4 (410-513)||(19551447-19551550)
chr4 (411-446)||(3009039-3009074)
[»] scaffold0061 (1 HSPs)
scaffold0061 (487-539)||(38085-38137)
[»] scaffold0017 (1 HSPs)
scaffold0017 (487-539)||(160642-160694)
[»] chr2 (2 HSPs)
chr2 (487-539)||(20380961-20381013)
chr2 (489-539)||(25976639-25976689)
[»] scaffold0567 (1 HSPs)
scaffold0567 (411-446)||(839-874)
[»] scaffold0490 (1 HSPs)
scaffold0490 (487-538)||(12090-12141)
[»] scaffold0125 (1 HSPs)
scaffold0125 (487-538)||(31435-31486)
[»] chr5 (1 HSPs)
chr5 (304-364)||(13644669-13644729)


Alignment Details
Target: chr6 (Bit Score: 543; Significance: 0; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 543; E-Value: 0
Query Start/End: Original strand, 1 - 588
Target Start/End: Complemental strand, 34217240 - 34216645
Alignment:
Q  1 gagataaggtgagaccccatctgttttgttcctctcatcaatggtgaattttatctataggaaccggcgagtaaaaaatatttttccatcatactcgcag 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34217240 gagataaggtgagaccccatctgttttgttcctctcatcaatggtgaattttatctataggaaccggcgagtaaaaaatatttttccatcatactcgcag 34217141  T
Q  101 tgatacatgaaatagatctaaaacatatatgaatcataatgtttcaagggtgacgcgctttgtatcagaattggtcaggtagaatactcgaaaggattgg 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34217140 tgatacatgaaatagatctaaaacatatatgaatcataatgtttcaagggtgacgcgctttgtatcagaattggtcaggtagaatactcgaaaggattgg 34217041  T
Q  201 cggaatgtcaaaatgctctctggggacgtctaaccttgaataagggcgacaagccataaatggagcatgatttggttactaagcttggaaaagta----- 295  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||         
T  34217040 cggaatgtcaaaatgctctctggggacgtctgaccttgaataagggcgacaagccataaatggagcatgatttggttactaagcttggaaaagtatggaa 34216941  T
Q  296 ---tgtgaacaaatggaaaatggtaccgcttggcaggggctattacgattttcattttgagtcggcagaggacttacaaaaaatttggtcggctggtacc 392  Q
       |||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34216940 gactgtgaataaatggaaaatggtaccgcttggcatgggctattacgattttcattttgagtcggcagaggacttacaaaaaatttggtcggctggtacc 34216841  T
Q  393 attgatttgaagccagatctccttcgtctctcccaatggacgaaggattttaattagtattcacagaagcagactcacgcttctatctggatctgtttgg 492  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  34216840 attgatttgaagccagatctccttcgtctctcccaatggacgaaggattttaattagtattcacagaagcagactcacgcttctatctggatccgtttgg 34216741  T
Q  493 ttgacttaccgcaagaatattggcgggaacaaacattgaaggaaatatatctctgttgcaagaacagacactctcttctacaccacttgatgatgt 588  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||    
T  34216740 ttgacttaccgcaagaatattggcgggaacaaacattgaaggaaatatgtctctgttgcaagaacagacactctcttctacaccacttaatgatgt 34216645  T

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Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 303 - 358
Target Start/End: Complemental strand, 31437604 - 31437549
Alignment:
Q  303 aaatggaaaatggtaccgcttggcaggggctattacgattttcattttgagtcggc 358  Q
    ||||||||||||||  ||||||| ||||| ||||| ||||||||||||||||||||    
T  31437604 aaatggaaaatggtgtcgcttggaaggggatattatgattttcattttgagtcggc 31437549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 411 - 445
Target Start/End: Complemental strand, 14385482 - 14385448
Alignment:
Q  411 ctccttcgtctctcccaatggacgaaggattttaa 445  Q
    |||||||| ||||||||||||||||||||||||||    
T  14385482 ctccttcgcctctcccaatggacgaaggattttaa 14385448  T

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Target: chr3 (Bit Score: 62; Significance: 2e-26; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 310 - 539
Target Start/End: Original strand, 21093356 - 21093584
Alignment:
Q  310 aaatggtaccgcttggcaggggctattacgattttcattttgagtcggcagaggacttacaaaaaatttggtcggctggtaccattgatttgaagccaga 409  Q
    ||||||| |||||||| ||||| ||||| || || |||||||||||||| ||||||||||  || |||||||||||| |||| ||  |||| | |||||     
T  21093356 aaatggtgccgcttggaaggggttattatgactt-cattttgagtcggccgaggacttacggaatatttggtcggctagtactatcaatttaaggccagg 21093454  T
Q  410 tctccttcgtctctcccaatggacgaaggattttaattagtattcacagaagcagactcacgcttctatctggatctgtttggttgacttaccgcaagaa 509  Q
    |||||||||| |||||||||||   || || |||  | | ||||||||||| |||||||| ||||| || |||||| | ||||| || ||||| ||||||    
T  21093455 tctccttcgtttctcccaatggctaaaagacttttctcattattcacagaaccagactcatgcttccatttggatccgcttggtcgaattaccacaagaa 21093554  T
Q  510 tattggcgggaacaaacattgaaggaaata 539  Q
    |||| || |||||  || ||||||||||||    
T  21093555 tattagcaggaacgtactttgaaggaaata 21093584  T

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Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 487 - 538
Target Start/End: Complemental strand, 14679887 - 14679836
Alignment:
Q  487 gtttggttgacttaccgcaagaatattggcgggaacaaacattgaaggaaat 538  Q
    |||||||||| ||||||||||| |||||||||||||  ||||||||||||||    
T  14679887 gtttggttgagttaccgcaagagtattggcgggaacgtacattgaaggaaat 14679836  T

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Target: chr7 (Bit Score: 60; Significance: 3e-25; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 233 - 405
Target Start/End: Original strand, 11482726 - 11482906
Alignment:
Q  233 accttgaataagggcgacaagccataaatggagcatgatttggttactaagcttggaaaagtatg--------tgaacaaatggaaaatggtaccgcttg 324  Q
    ||||| ||||||||| |||||||||| || |  ||  ||| |||||||||||| |||||||||||        |||| ||||||||||||||||  |||     
T  11482726 accttaaataagggcaacaagccatacatagctcagaattcggttactaagctcggaaaagtatggaagactatgaataaatggaaaatggtactacttt 11482825  T
Q  325 gcaggggctattacgattttcattttgagtcggcagaggacttacaaaaaatttggtcggctggtaccattgatttgaagc 405  Q
    | ||||||||||||||||||||| || |||||||||||||||||| ||||| ||||||  |||||| | ||||||||||||    
T  11482826 gaaggggctattacgattttcatatttagtcggcagaggacttacgaaaaaattggtcaactggtatcgttgatttgaagc 11482906  T

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Target: chr7; HSP #2
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 458 - 539
Target Start/End: Original strand, 11482902 - 11482983
Alignment:
Q  458 gaagcagactcacgcttctatctggatctgtttggttgacttaccgcaagaatattggcgggaacaaacattgaaggaaata 539  Q
    |||||||||||| ||||||||||| | | || ||||||| |||||||||||||||||| |||||||||||  ||||||||||    
T  11482902 gaagcagactcatgcttctatctgaacccgtatggttgaattaccgcaagaatattggtgggaacaaacaccgaaggaaata 11482983  T

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Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 144 - 208
Target Start/End: Original strand, 11482645 - 11482709
Alignment:
Q  144 tcaagggtgacgcgctttgtatcagaattggtcaggtagaatactcgaaaggattggcggaatgt 208  Q
    |||||| ||||||| | || |||||||||||||||| ||||||| | |||| |||||| ||||||    
T  11482645 tcaaggttgacgcgttatgcatcagaattggtcaggaagaatacacaaaagtattggcagaatgt 11482709  T

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Target: chr8 (Bit Score: 48; Significance: 4e-18; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 70 - 145
Target Start/End: Original strand, 14621911 - 14621986
Alignment:
Q  70 agtaaaaaatatttttccatcatactcgcagtgatacatgaaatagatctaaaacatatatgaatcataatgtttc 145  Q
    |||||||||||||||||| ||  |||||  |||||||||||||| ||||||||||||||| |||||||||||||||    
T  14621911 agtaaaaaatatttttccctcccactcgttgtgatacatgaaattgatctaaaacatataagaatcataatgtttc 14621986  T

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Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 4 - 41
Target Start/End: Original strand, 9684711 - 9684748
Alignment:
Q  4 ataaggtgagaccccatctgttttgttcctctcatcaa 41  Q
    ||||||||||||||||||| ||||||||||||||||||    
T  9684711 ataaggtgagaccccatctattttgttcctctcatcaa 9684748  T

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Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 411 - 445
Target Start/End: Original strand, 17271738 - 17271772
Alignment:
Q  411 ctccttcgtctctcccaatggacgaaggattttaa 445  Q
    |||||||| ||||||||||||||||||||||||||    
T  17271738 ctccttcgcctctcccaatggacgaaggattttaa 17271772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 410 - 446
Target Start/End: Complemental strand, 45270582 - 45270546
Alignment:
Q  410 tctccttcgtctctcccaatggacgaaggattttaat 446  Q
    |||||||||||| || |||||||||||||||||||||    
T  45270582 tctccttcgtctttctcaatggacgaaggattttaat 45270546  T

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Target: chr4 (Bit Score: 44; Significance: 9e-16; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 410 - 513
Target Start/End: Original strand, 19551447 - 19551550
Alignment:
Q  410 tctccttcgtctctcccaatggacgaaggattttaattagtattcacagaagcagactcacgcttctatctggatctgtttggttgacttaccgcaagaa 509  Q
    ||||||||||||||| |||| ||||||||| |||||| | |||||| ||||||| ||||||||||| || |||||  | |||||||| || || ||||||    
T  19551447 tctccttcgtctctcacaatagacgaaggactttaatcattattcatagaagcaaactcacgcttccatttggattcgcttggttgaattgccccaagaa 19551546  T
Q  510 tatt 513  Q
    ||||    
T  19551547 tatt 19551550  T

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Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 411 - 446
Target Start/End: Complemental strand, 3009074 - 3009039
Alignment:
Q  411 ctccttcgtctctcccaatggacgaaggattttaat 446  Q
    |||||||| |||||||||||||||||||||||||||    
T  3009074 ctccttcgcctctcccaatggacgaaggattttaat 3009039  T

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Target: scaffold0061 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: scaffold0061
Description:

Target: scaffold0061; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 487 - 539
Target Start/End: Original strand, 38085 - 38137
Alignment:
Q  487 gtttggttgacttaccgcaagaatattggcgggaacaaacattgaaggaaata 539  Q
    ||||||| || ||||||||||| ||||||||||| | ||||||||||||||||    
T  38085 gtttggtggagttaccgcaagagtattggcgggagcgaacattgaaggaaata 38137  T

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Target: scaffold0017 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: scaffold0017
Description:

Target: scaffold0017; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 487 - 539
Target Start/End: Complemental strand, 160694 - 160642
Alignment:
Q  487 gtttggttgacttaccgcaagaatattggcgggaacaaacattgaaggaaata 539  Q
    ||||||| || ||||||||||| ||||||||||| | ||||||||||||||||    
T  160694 gtttggtggagttaccgcaagagtattggcgggagcgaacattgaaggaaata 160642  T

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Target: chr2 (Bit Score: 33; Significance: 0.000000003; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 487 - 539
Target Start/End: Original strand, 20380961 - 20381013
Alignment:
Q  487 gtttggttgacttaccgcaagaatattggcgggaacaaacattgaaggaaata 539  Q
    ||||||| || ||||||||||| ||||||||||| | ||||||||||||||||    
T  20380961 gtttggtggagttaccgcaagagtattggcgggagcgaacattgaaggaaata 20381013  T

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Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 489 - 539
Target Start/End: Complemental strand, 25976689 - 25976639
Alignment:
Q  489 ttggttgacttaccgcaagaatattggcgggaacaaacattgaaggaaata 539  Q
    ||||| || ||||||||||| ||||||||||||| ||| ||||||||||||    
T  25976689 ttggtggagttaccgcaagagtattggcgggaacgaaccttgaaggaaata 25976639  T

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Target: scaffold0567 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0567
Description:

Target: scaffold0567; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 411 - 446
Target Start/End: Original strand, 839 - 874
Alignment:
Q  411 ctccttcgtctctcccaatggacgaaggattttaat 446  Q
    |||||||| |||||||||||||||||||||||||||    
T  839 ctccttcgcctctcccaatggacgaaggattttaat 874  T

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Target: scaffold0490 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0490
Description:

Target: scaffold0490; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 487 - 538
Target Start/End: Original strand, 12090 - 12141
Alignment:
Q  487 gtttggttgacttaccgcaagaatattggcgggaacaaacattgaaggaaat 538  Q
    |||||||||| ||||||||||| ||||||||||| |  ||||||||||||||    
T  12090 gtttggttgagttaccgcaagagtattggcgggagcgtacattgaaggaaat 12141  T

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Target: scaffold0125 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0125
Description:

Target: scaffold0125; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 487 - 538
Target Start/End: Complemental strand, 31486 - 31435
Alignment:
Q  487 gtttggttgacttaccgcaagaatattggcgggaacaaacattgaaggaaat 538  Q
    |||||||||| ||||||||||| ||||||||||||   ||||||||||||||    
T  31486 gtttggttgagttaccgcaagagtattggcgggaatgtacattgaaggaaat 31435  T

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Target: chr5 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 304 - 364
Target Start/End: Complemental strand, 13644729 - 13644669
Alignment:
Q  304 aatggaaaatggtaccgcttggcaggggctattacgattttcattttgagtcggcagagga 364  Q
    ||||||||||||| || ||||||| ||| ||||| || ||||||||||| ||||| |||||    
T  13644729 aatggaaaatggtgcctcttggcaaggggtattatgactttcattttgactcggcggagga 13644669  T

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