View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6499_high_4 (Length: 411)
Name: NF6499_high_4
Description: NF6499
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6499_high_4 |
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Alignment Details
Target: chr1 (Bit Score: 195; Significance: 1e-106; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 17 - 219
Target Start/End: Complemental strand, 40969140 - 40968938
Alignment:
| Q |
17 |
agataaggagtgtgttgcaaacaatgataaaacaagtgatgattataccgacgatgaaagtgattttgaggagaattgggattggagctgtgttatccca |
116 |
Q |
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| T |
40969140 |
agataaggactgtgttgcaaacaatgataaaacaagtgatgattataccgacgatgaaagtgattttgaggagaattgggattggagcagtgttatccca |
40969041 |
T |
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| Q |
117 |
taagaaacaaggaggttaattctaacattgtctcaagagtagatattaacctggtttctaatctgatagtttatgttgaagttgaaatcttggattcaat |
216 |
Q |
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| T |
40969040 |
taagaaacaaggaggttaattctaacattgtctcaagagtagatattaacctggtttctaatctgatagtttatgttgaagttgaaatcttggattcaat |
40968941 |
T |
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| Q |
217 |
ttc |
219 |
Q |
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||| |
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| T |
40968940 |
ttc |
40968938 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 291 - 400
Target Start/End: Complemental strand, 40968875 - 40968766
Alignment:
| Q |
291 |
aaattgagggactaaaactacaattaaacctttaaaatagtgttaaattggtagaataaaaactacacgaataattatagatttgatattgacttatttg |
390 |
Q |
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|||| ||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||| |
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| T |
40968875 |
aaatggagagactaaaactgcaattaaacctttaaaatagtgttaaattggtagaataaaaactacacgaataagtatagattagatattgacttatttg |
40968776 |
T |
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| Q |
391 |
aatcaatttt |
400 |
Q |
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| T |
40968775 |
aatcaatttt |
40968766 |
T |
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