View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6499_high_5 (Length: 370)
Name: NF6499_high_5
Description: NF6499
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6499_high_5 |
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| [»] chr5 (2 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 350; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 350; E-Value: 0
Query Start/End: Original strand, 1 - 370
Target Start/End: Original strand, 3083788 - 3084157
Alignment:
| Q |
1 |
tccatattataagagtccagaaatttagtttttcaaatttgcaaaatagtaagttagtctcttaaaataaagaaagtcaataatttagttccttcaccaa |
100 |
Q |
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| T |
3083788 |
tccatattataagagtccagaaatttagtttttcaaatttgcaaaatagtaagttagtctcttaaaataaagaaagtcaataatttagttccttcaccaa |
3083887 |
T |
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| Q |
101 |
gatatctcttaaatttgctaaattttaacaatgattaaattgactaacggttcattttaagagactaaattgcaatttctcgaatttgaatgactaaata |
200 |
Q |
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| T |
3083888 |
gatatctcttaaatttgctaaattttaacaatgattaaattgactaacggttcattttaagagactaaattgcaatttctcgaattcgaatgactaaata |
3083987 |
T |
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| Q |
201 |
tgagtactaaaatgttaatttcctcactcttttcctatttattttggtgacttggtccatgtaataattattttgagaatgcatggtgtatgatattaaa |
300 |
Q |
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| T |
3083988 |
tgagtactaaaatgttaatttcctcactcttttcccatttattttggtgacttggtccatgtaataattattttgtgaatgcatggtgtatgatattaaa |
3084087 |
T |
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| Q |
301 |
cagaaagatcaaattcaaggcctgttgcacatggagttctattcaaggatgcgcgagggacagaacacag |
370 |
Q |
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| T |
3084088 |
cagaaagatcaaattcaaggcctgttgcacatggagttctatacaaggatgcacgagggacagaacacag |
3084157 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 236 - 370
Target Start/End: Original strand, 3092903 - 3093037
Alignment:
| Q |
236 |
tatttattttggtgacttggtccatgtaataattattttgagaatgcatggtgtatgatattaaacagaaagatcaaattcaaggcctgttgcacatgga |
335 |
Q |
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| T |
3092903 |
tatttattttgttgtctcggtccatttaatgatgattatgtgaatacattgtgcatgatatcaaacaggtggattaagttcaaagccaattgcacatgga |
3093002 |
T |
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| Q |
336 |
gttctattcaaggatgcgcgagggacagaacacag |
370 |
Q |
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| T |
3093003 |
gttctatacaaggatgcacgagggacagaacacag |
3093037 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 22 - 62
Target Start/End: Original strand, 41590799 - 41590839
Alignment:
| Q |
22 |
aatttagtttttcaaatttgcaaaatagtaagttagtctct |
62 |
Q |
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| T |
41590799 |
aattcagtttttcaaatttgcaaaatagtaatttagtctct |
41590839 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 22 - 66
Target Start/End: Original strand, 41513824 - 41513868
Alignment:
| Q |
22 |
aatttagtttttcaaatttgcaaaatagtaagttagtctcttaaa |
66 |
Q |
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| T |
41513824 |
aatttagtccttcaaatttgcaaaatagcaagttagtcccttaaa |
41513868 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 22 - 66
Target Start/End: Complemental strand, 40213451 - 40213407
Alignment:
| Q |
22 |
aatttagtttttcaaatttgcaaaatagtaagttagtctcttaaa |
66 |
Q |
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||||||||| || ||||||||||||| |||| ||||||||||||| |
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| T |
40213451 |
aatttagttatttaaatttgcaaaattgtaatttagtctcttaaa |
40213407 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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