View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6499_low_11 (Length: 310)

Name: NF6499_low_11
Description: NF6499
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6499_low_11
NF6499_low_11
[»] chr1 (2 HSPs)
chr1 (31-301)||(42205604-42205874)
chr1 (31-301)||(42214472-42214742)


Alignment Details
Target: chr1 (Bit Score: 271; Significance: 1e-151; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 31 - 301
Target Start/End: Original strand, 42205604 - 42205874
Alignment:
Q  31 gtgtgtgtgtgatacgcacctgtggccgcaacaagtagtacatggttcaaagtatatctccaaacaaatctgccagaatgaataaaaaatcagcattgta 130  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42205604 gtgtgtgtgtgatacgcacctgtggccgcaacaagtagtacatggttcaaagtatatctccaaacaaatctgccagaatgaataaaaaatcagcattgta 42205703  T
Q  131 acttacatatcaacaatgtataaagctagattagaaaaaacatcacaaggatttcattaccggacatgaaaacttctcggtgagttcatcggtgtaaggg 230  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42205704 acttacatatcaacaatgtataaagctagattagaaaaaacatcacaaggatttcattaccggacatgaaaacttctcggtgagttcatcggtgtaaggg 42205803  T
Q  231 ataacagcggacgacaaatcagaactcatcttgacgaaatttttcagagaaagcgacgtaccttttcttct 301  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42205804 ataacagcggacgacaaatcagaactcatcttgacgaaatttttcagagaaagcgacgtaccttttcttct 42205874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 31 - 301
Target Start/End: Original strand, 42214472 - 42214742
Alignment:
Q  31 gtgtgtgtgtgatacgcacctgtggccgcaacaagtagtacatggttcaaagtatatctccaaacaaatctgccagaatgaataaaaaatcagcattgta 130  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42214472 gtgtgtgtgtgatacgcacctgtggccgcaacaagtagtacatggttcaaagtatatctccaaacaaatctgccagaatgaataaaaaatcagcattgta 42214571  T
Q  131 acttacatatcaacaatgtataaagctagattagaaaaaacatcacaaggatttcattaccggacatgaaaacttctcggtgagttcatcggtgtaaggg 230  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42214572 acttacatatcaacaatgtataaagctagattagaaaaaacatcacaaggatttcattaccggacatgaaaacttctcggtgagttcatcggtgtaaggg 42214671  T
Q  231 ataacagcggacgacaaatcagaactcatcttgacgaaatttttcagagaaagcgacgtaccttttcttct 301  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42214672 ataacagcggacgacaaatcagaactcatcttgacgaaatttttcagagaaagcgacgtaccttttcttct 42214742  T

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