View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6499_low_13 (Length: 251)
Name: NF6499_low_13
Description: NF6499
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6499_low_13 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 182; Significance: 2e-98; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 1 - 241
Target Start/End: Original strand, 42205972 - 42206221
Alignment:
| Q |
1 |
ctagtaaaaaataatccacgttattcctttcaaaaagtacagcgaaagggactttcacgaaccatcacgataagttgaaatggcaatatcacaccactac |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
42205972 |
ctagtaaaaaataatccacgttattcctttcaaaaagtacagcgaaagggactttcacgaaccataacgataagttgaaatggcaatatcacaccactac |
42206071 |
T |
|
| Q |
101 |
taccg-----------taaaattcggtgttaaagtaaataaaattgttttacggcaaaaactcctttttaacaatctagaattaaaattgtatatatttt |
189 |
Q |
| |
|
||||| |||||| |||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42206072 |
taccgggatgatttcgtaaaatccggtgttaaagtaaataaaattgttttacggcaaga-ctcctttttaacaatctagaattaaaattgtatatatttt |
42206170 |
T |
|
| Q |
190 |
gtgacaaggatagccaatttaaaaatcatatccattataacatatttctctg |
241 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
42206171 |
gtgacaa-gatagccaatttaaaaatcatatccattataacacatttctctg |
42206221 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 1 - 241
Target Start/End: Original strand, 42214840 - 42215089
Alignment:
| Q |
1 |
ctagtaaaaaataatccacgttattcctttcaaaaagtacagcgaaagggactttcacgaaccatcacgataagttgaaatggcaatatcacaccactac |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
42214840 |
ctagtaaaaaataatccacgttattcctttcaaaaagtacagcgaaagggactttcacgaaccataacgataagttgaaatggcaatatcacaccactac |
42214939 |
T |
|
| Q |
101 |
taccg-----------taaaattcggtgttaaagtaaataaaattgttttacggcaaaaactcctttttaacaatctagaattaaaattgtatatatttt |
189 |
Q |
| |
|
||||| |||||| |||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42214940 |
taccgggatgatttcgtaaaatccggtgttaaagtaaataaaattgttttacggcaaga-ctcctttttaacaatctagaattaaaattgtatatatttt |
42215038 |
T |
|
| Q |
190 |
gtgacaaggatagccaatttaaaaatcatatccattataacatatttctctg |
241 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
42215039 |
gtgacaa-gatagccaatttaaaaatcatatccattataacacatttctctg |
42215089 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University