View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6499_low_14 (Length: 237)
Name: NF6499_low_14
Description: NF6499
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6499_low_14 |
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| [»] scaffold0300 (1 HSPs) |
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Alignment Details
Target: scaffold0300 (Bit Score: 132; Significance: 1e-68; HSPs: 1)
Name: scaffold0300
Description:
Target: scaffold0300; HSP #1
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 2625 - 2847
Alignment:
| Q |
1 |
atttctatcactaacacaaaaaatacctctcaactcgagtaggctaagnnnnnnnnn-attgaaaaaatttgatcgaaagcttgtaagtctttactgtta |
99 |
Q |
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||||||||||||| ||||| |||||||||||||||||| || |||||| ||||||||||||||||||||||| |||||||||||||| ||| |
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| T |
2625 |
atttctatcactatcacaacaaatacctctcaactcgaataagctaagttttttttttattgaaaaaatttgatcgaaagcctgtaagtctttactatta |
2724 |
T |
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| Q |
100 |
attgggacaattgttcggtctgtaataggcaaatgagtcaaaaacaaaacgtcctccaatgtgacgttcatgttttgaacacaaactcgaaaataagaaa |
199 |
Q |
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||||||||||||| ||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||| ||| || ||||||||||||| |
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| T |
2725 |
attgggacaattggtcggtctgtaataggcaaatgggtcaaaaacaaaacgtcttccaatgtgacgttcatgttttgactacagacccgaaaataagaaa |
2824 |
T |
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| Q |
200 |
cattttccatagagttataaaat |
222 |
Q |
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||||||| ||||||||||||||| |
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| T |
2825 |
cattttctatagagttataaaat |
2847 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 111; Significance: 4e-56; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 1 - 223
Target Start/End: Complemental strand, 24679499 - 24679278
Alignment:
| Q |
1 |
atttctatcactaacacaaaaaatacctctcaactcgagtaggctaagnnnnnnnnnattgaaaaaatttgatcgaaagcttgtaagtctttactgttaa |
100 |
Q |
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||||||||||||| ||||| |||||||| ||||||||||||||||||| |||||||||||| ||| ||||||||||||||||||||||||| |
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| T |
24679499 |
atttctatcactatcacaacaaatacctttcaactcgagtaggctaagtttttttt-attgaaaaaattcaatcaaaagcttgtaagtctttactgttaa |
24679401 |
T |
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| Q |
101 |
ttgggacaattgttcggtctgtaataggcaaatgagtcaaaaacaaaacgtcctccaatgtgacgttcatgttttgaacacaaactcgaaaataagaaac |
200 |
Q |
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||| | |||||| ||| ||||| |||||||||| |||||||||||||| |||||||||| |||||||||||||||| ||| ||||||||||||||||| |
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| T |
24679400 |
ttgaggcaattggtcgacctgtagtaggcaaatgtgtcaaaaacaaaacatcctccaatgcgacgttcatgttttgaccactgactcgaaaataagaaac |
24679301 |
T |
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| Q |
201 |
attttccatagagttataaaatt |
223 |
Q |
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|||||| ||| |||||||||||| |
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| T |
24679300 |
attttctatatagttataaaatt |
24679278 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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