View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6499_low_2 (Length: 561)
Name: NF6499_low_2
Description: NF6499
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6499_low_2 |
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Alignment Details
Target: chr8 (Bit Score: 293; Significance: 1e-164; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 293; E-Value: 1e-164
Query Start/End: Original strand, 215 - 544
Target Start/End: Complemental strand, 946982 - 946658
Alignment:
| Q |
215 |
attgattttgaatgaaagtgatttaaacataaattgctttatgtttgtatacattcataaaaaagagattttatgaatttgtgttagaaaagtttggttt |
314 |
Q |
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| T |
946982 |
attggttttgaatgaaagtgatttaaacgtaaattgctttatgtttgtatacattcataaaaa-gagattttatgaatttgtgttagaaaagtttggttt |
946884 |
T |
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| Q |
315 |
aaaattatagctttttagtactatatatacacacacactacatagtaataatttgataaatacatgaagtttgataaataaacaacttactaatggaaac |
414 |
Q |
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| T |
946883 |
aaaattatagctttttagtactatatatacacac----tacatagtaataatttgataaatacatgaagtatgataaataaacaacttactaatggaaac |
946788 |
T |
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| Q |
415 |
tgcaggaggaacaacatagtgaagtagtaaaacaaattgatataatggatcagagtttatcaatctgaaatgagctgcacctttcacaatgcatatacct |
514 |
Q |
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| T |
946787 |
tgcaggaggaacaacatagtgaagtagtaaaacaaattgatataatggatcagagtttatcaatctgaaatgagctgcacctttcacaatgcatatacct |
946688 |
T |
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| Q |
515 |
attgctggtaatgcaatatacataaccact |
544 |
Q |
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| T |
946687 |
attgctggtaatgcaatatacataaccact |
946658 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 208; E-Value: 1e-113
Query Start/End: Original strand, 14 - 229
Target Start/End: Complemental strand, 947212 - 946997
Alignment:
| Q |
14 |
caaagggtaagtaaaagtggagcagaggaataagttgcaaacatgataagtgagcattcactttgaccaactccaagcaattgagtcattgtgcctaata |
113 |
Q |
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| T |
947212 |
caaagggtaagtaaaagtggagcagaggaataagttgcaaacatgataagtgagcattcactttgaccaactccaagcaattgagtcattgtgcctaata |
947113 |
T |
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| Q |
114 |
cattcataattaaagttagtaactatctaaattcaatgtcaaaataataatttaggatgaaataaaaatttaggacgacaatatcgattaacatacgttt |
213 |
Q |
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| T |
947112 |
cattcataattaaagttagtaactatctaaattcaatgtcaaaataataattaaggatgaaataaaaatttaggacgacaacatcgattaacatacgttt |
947013 |
T |
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| Q |
214 |
gattgattttgaatga |
229 |
Q |
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| T |
947012 |
gattgattttgaatga |
946997 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 215 - 271
Target Start/End: Complemental strand, 46864380 - 46864324
Alignment:
| Q |
215 |
attgattttgaatgaaagtgatttaaacataaattgctttatgtttgtatacattca |
271 |
Q |
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| T |
46864380 |
attgattttggttaaaagtgattttaacataaagtggtttatgtttgtataccttca |
46864324 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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