View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6499_low_4 (Length: 472)
Name: NF6499_low_4
Description: NF6499
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6499_low_4 |
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Alignment Details
Target: chr6 (Bit Score: 452; Significance: 0; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 452; E-Value: 0
Query Start/End: Original strand, 1 - 464
Target Start/End: Complemental strand, 34216676 - 34216213
Alignment:
| Q |
1 |
cagacactctcttctacaccacttaatgatgtttctgccaactctttcagcttgacattgcagaatgttacagatgaaattccacagggaaggtttcctc |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34216676 |
cagacactctcttctacaccacttaatgatgtttctgccaactctttcagcttgacattgcagaatgttacagatgaaattccacagggaaggtttcctc |
34216577 |
T |
|
| Q |
101 |
actccgctagtcccgagttggaattggtttccgaggtagcacacgatgacgtgcattcacagggagtagagaaaatgccacaggattctcggaacgtaag |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34216576 |
actccgctagtcccgagttggaattggtttccgaggtagcacacgatgacgtgcattcacagggagtagagaaaatgccacaggattctcggaacgtaag |
34216477 |
T |
|
| Q |
201 |
agttcttgggacttctgtcgctgctgttcggctcccctcttcagttgagcacgtcaacgtgcatgagaactctgagtttactgtttctgcttctgttacg |
300 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
34216476 |
agttcttgggacttctgtcgctgccgttcggctcccctcttcagttgagcacgtcaacgtgcatgagaactctgagtttactgtttctgcttctgttaag |
34216377 |
T |
|
| Q |
301 |
gagatgagtccctcgcttgcccaactcagtaaatcacaaacggatgtttccaccaattcgttcaaccttgccttgcaatatgttatagatgaaattccaa |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34216376 |
gagatgagtccctcgcttgcccaactcagtaaatcacaaacggatgtttccaccaattcgttcaaccttgccttgcaatatgttatagatgaaattccaa |
34216277 |
T |
|
| Q |
401 |
agggaaggttgcctcagctcactagccccgtgttggatttggttactgcagtagcatatgatga |
464 |
Q |
| |
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| T |
34216276 |
agggaaggttgcctcagctcactagccccgtgttggatttggttactgcagtagcatacgatga |
34216213 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 65 - 323
Target Start/End: Complemental strand, 34216297 - 34216038
Alignment:
| Q |
65 |
atgttacagatgaaattccacagggaaggtttcctcactccgctagtcccgagttggaattggtttccgaggtagcacacgatgacgtgcattcacaggg |
164 |
Q |
| |
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|||||| ||||||||||||| |||||||||| ||||| | |||| |||| |||||| |||||| | | |||||| ||||||||||||||||| | | |
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| T |
34216297 |
atgttatagatgaaattccaaagggaaggttgcctcagctcactagccccgtgttggatttggttactgcagtagcatacgatgacgtgcattcaaatgt |
34216198 |
T |
|
| Q |
165 |
agtagagaaaatgc-cacaggattctcggaacgtaagagttcttgggacttctgtcgctgctgttcggctcccctcttcagttgagcacgtcaacgtgca |
263 |
Q |
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||| ||| ||| | |||||||||| | || || ||||| | ||||||||| |||||||||| ||| ||| |||| | |||||||| ||||||| |
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| T |
34216197 |
agtggagcaaacactttcaggattctcaggacacgagcgttctagagacttctgtagctgctgttccgcttaccttttcaatagagcacgttgacgtgca |
34216098 |
T |
|
| Q |
264 |
tgagaactctgagtttactgtttctgcttctgttacggagatgagtccctcgcttgccca |
323 |
Q |
| |
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|||||| | ||||| || | || |||||||||| | |||||||||||||||| ||||| |
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| T |
34216097 |
tgagaatgccgagttagctctctccgcttctgttaggtagatgagtccctcgctggccca |
34216038 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 37; Significance: 0.00000000001; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 33 - 227
Target Start/End: Original strand, 19552189 - 19552380
Alignment:
| Q |
33 |
ttctgccaactctttcagcttgacattgcagaatgttacagatgaaattccacagggaaggtttcctcactccgctagtcccgagttggaattggtttcc |
132 |
Q |
| |
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|||||||||||| |||||||| | ||||| ||||||||||||||||| || || |||||||| ||||| | |||||||| ||| || ||| || |
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| T |
19552189 |
ttctgccaactcgttcagctttgcgttgcaaaatgttacagatgaaatccctcaaggaaggttacctcaggcttctagtcccatgttagagttg---tct |
19552285 |
T |
|
| Q |
133 |
gaggtagcacacgatgacgtgcattcacagggagtagagaaaatgccacaggattctcggaacgtaagagttcttgggacttctgtcgctgctgt |
227 |
Q |
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|| ||||| ||| |||||||||||||||| ||||| || ||| | |||||| ||||||| |||| ||||||| || ||||| ||||||||| |
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| T |
19552286 |
gaagtagcgcacaatgacgtgcattcacatggagtggaacaaacacaacaggactctcggaccgtacaggttcttgagatttctgccgctgctgt |
19552380 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 31 - 161
Target Start/End: Complemental strand, 27457937 - 27457810
Alignment:
| Q |
31 |
gtttctgccaactctttcagcttgacattgcagaatgttacagatgaaattccacagggaaggtttcctcactccgctagtcccgagttggaattggttt |
130 |
Q |
| |
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||||| |||||||| |||||||| ||||||| ||||||| |||||||| || || |||||||| ||||| ||| |||||| | |||||| || | |
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| T |
27457937 |
gtttccgccaactcgttcagctttgcattgcataatgttatggatgaaatccctcaaggaaggttacctcaggccgttagtcctgtgttggagctg---t |
27457841 |
T |
|
| Q |
131 |
ccgaggtagcacacgatgacgtgcattcaca |
161 |
Q |
| |
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|||| ||||| |||||||||||||||||||| |
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| T |
27457840 |
ccgaagtagcgcacgatgacgtgcattcaca |
27457810 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 117 - 157
Target Start/End: Original strand, 21565079 - 21565119
Alignment:
| Q |
117 |
gttggaattggtttccgaggtagcacacgatgacgtgcatt |
157 |
Q |
| |
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|||||||||||||||||||||||| |||||||||||||||| |
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| T |
21565079 |
gttggaattggtttccgaggtagcccacgatgacgtgcatt |
21565119 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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