View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6499_low_7 (Length: 346)

Name: NF6499_low_7
Description: NF6499
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6499_low_7
NF6499_low_7
[»] chr7 (2 HSPs)
chr7 (17-330)||(18892455-18892758)
chr7 (153-305)||(6560315-6560468)
[»] chr4 (1 HSPs)
chr4 (17-330)||(34215676-34215990)
[»] chr6 (5 HSPs)
chr6 (114-330)||(16320403-16320620)
chr6 (44-230)||(16348015-16348202)
chr6 (17-101)||(16322451-16322535)
chr6 (17-101)||(16334599-16334683)
chr6 (226-330)||(16344594-16344698)
[»] chr1 (4 HSPs)
chr1 (17-305)||(13167130-13167419)
chr1 (17-314)||(13151025-13151326)
chr1 (17-207)||(13179275-13179465)
chr1 (24-203)||(44313856-44314036)
[»] chr2 (1 HSPs)
chr2 (30-152)||(30678087-30678209)


Alignment Details
Target: chr7 (Bit Score: 251; Significance: 1e-139; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 17 - 330
Target Start/End: Original strand, 18892455 - 18892758
Alignment:
Q  17 agaagattcaataagttcctcgacacataaacgataggcactcttcacataatattttccattctttttagccttccaaattaaatggtctgactataca 116  Q
    ||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||    
T  18892455 agaagattcgataagttcctcgacacataaacgataggcgctcttcacataatattttccattctttttagccttccaaattaaacggtctgactgtaca 18892554  T
Q  117 tgagcaacaagggacgtactcatgattttatctgctaattttgcactaaagacctgtctgacaacacctcgttccatctcttctcatttgggagcatcaa 216  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||     
T  18892555 tgagcaacaagggacgtactcatgattttatctgctaattttgcactatagacctgtctgacaacacctcattccatctcttctcatttgggagcatca- 18892653  T
Q  217 gttatcgatagtagcatggtggacataatgtgcgcctacaatattagtagcgatgcattctccattcaagacccaaggttctcccaaaacagggatagat 316  Q
             |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  18892654 ---------agtagcatggtggacataatgtgcgcctacaatattagtagcgatgcattctccattcaagacccaaggttctcccaaaatagggatagat 18892744  T
Q  317 ctgccggtacctat 330  Q
    ||||||||||||||    
T  18892745 ctgccggtacctat 18892758  T

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Target: chr7; HSP #2
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 153 - 305
Target Start/End: Complemental strand, 6560468 - 6560315
Alignment:
Q  153 aattttgcactaaagacctgtctgacaacac-ctcgttccatctcttctcatttgggagcatcaagttatcgatagtagcatggtggacataatgtgcgc 251  Q
    |||| |||||||||||||||||||||  |   ||| ||||||| ||||||||||| ||||||||| ||||| | ||| |||||||| ||||||||||| |    
T  6560468 aattctgcactaaagacctgtctgacttccgtctcattccatcgcttctcatttgagagcatcaaattatcaacagtggcatggtgtacataatgtgcac 6560369  T
Q  252 ctacaatattagtagcgatgcattctccattcaagacccaaggttctcccaaaa 305  Q
    ||||||||| || ||| ||    ||||||||||||| ||||||||| |||||||    
T  6560368 ctacaatatcagaagcaatattgtctccattcaagagccaaggttcacccaaaa 6560315  T

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Target: chr4 (Bit Score: 131; Significance: 6e-68; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 131; E-Value: 6e-68
Query Start/End: Original strand, 17 - 330
Target Start/End: Original strand, 34215676 - 34215990
Alignment:
Q  17 agaagattcaataagttcctcgacacataaacgataggcactcttcacataatattttccattctttttagccttccaaattaaatggtctgactataca 116  Q
    |||||| | |||||| ||||||||||||||| |||| |  ||||||||  ||||| ||||||| |||| |||||||||||||||| | |||   | ||||    
T  34215676 agaagagttaataagctcctcgacacataaatgataagtgctcttcacggaatatcttccatttttttcagccttccaaattaaacgatctacttgtaca 34215775  T
Q  117 tgagcaacaagggacgtactcatgattttatctgctaattttgcactaaagacctgtctgacaac-acctcgttccatctcttctcatttgggagcatca 215  Q
    |||||||| || |  || |||||||||||||||||||| | |||||||| ||||||||||||||| ||||| ||||||||||| |||||||| |||||||    
T  34215776 tgagcaactagtggagtgctcatgattttatctgctaaatctgcactaaggacctgtctgacaaccacctcattccatctcttttcatttggaagcatca 34215875  T
Q  216 agttatcgatagtagcatggtggacataatgtgcgcctacaatattagtagcgatgcattctccattcaagacccaaggttctcccaaaacagggataga 315  Q
    | ||||| | ||||||||| || ||||||||||| |||| ||||| |||||| || |  ||||||||||||||||||||||||||||||| |||||||||    
T  34215876 aattatcaacagtagcatgatgaacataatgtgcacctataatatcagtagcaatactctctccattcaagacccaaggttctcccaaaatagggataga 34215975  T
Q  316 tctgccggtacctat 330  Q
    |||||| || |||||    
T  34215976 tctgccagtgcctat 34215990  T

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Target: chr6 (Bit Score: 94; Significance: 8e-46; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 94; E-Value: 8e-46
Query Start/End: Original strand, 114 - 330
Target Start/End: Complemental strand, 16320620 - 16320403
Alignment:
Q  114 acatgagcaacaagggacgtactcatgattttatctgctaattttgcactaaagacctgtctgacaac-acctcgttccatctcttctcatttgggagca 212  Q
    ||||||||||| || |  ||||||||||||| ||||||||| | |||||||| ||||| ||||||||| ||||| ||||||||||| |||||||| ||||    
T  16320620 acatgagcaaccagtggagtactcatgatttgatctgctaaatctgcactaaggacctatctgacaaccacctcattccatctcttttcatttggaagca 16320521  T
Q  213 tcaagttatcgatagtagcatggtggacataatgtgcgcctacaatattagtagcgatgcattctccattcaagacccaaggttctcccaaaacagggat 312  Q
    |||| ||||| | ||||||||| || ||||| ||| | || | ||||| |||||| || |  ||||||||||||||||||||||||||||||| ||||||    
T  16320520 tcaaattatcaacagtagcatgatgaacatattgtacaccaataatatcagtagcaatactatctccattcaagacccaaggttctcccaaaatagggat 16320421  T
Q  313 agatctgccggtacctat 330  Q
    ||||||||| ||||||||    
T  16320420 agatctgccagtacctat 16320403  T

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Target: chr6; HSP #2
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 44 - 230
Target Start/End: Complemental strand, 16348202 - 16348015
Alignment:
Q  44 taaacgataggcactcttcacataatattttccattctttttagccttccaaattaaatggtctgactatacatgagcaacaagggacgtactcatgatt 143  Q
    |||||||||||| ||||||||  ||||| ||| |||||||| ||||||||||||||||   | |  || |||||||||||| || |  ||||||||||||    
T  16348202 taaacgataggcgctcttcacggaatatcttctattcttttcagccttccaaattaaacaatattcctgtacatgagcaaccagtggagtactcatgatt 16348103  T
Q  144 ttatctgctaattttgcactaaagacctgtctgacaa-cacctcgttccatctcttctcatttgggagcatcaagttatcgatagtag 230  Q
    ||||||| ||| | |||||||| |||||||||||||| |||||| ||||||||||| |||||||| |||||||| ||||| |||||||    
T  16348102 ttatctggtaaatctgcactaaggacctgtctgacaaccacctcattccatctcttttcatttggaagcatcaaattatcaatagtag 16348015  T

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Target: chr6; HSP #3
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 17 - 101
Target Start/End: Complemental strand, 16322535 - 16322451
Alignment:
Q  17 agaagattcaataagttcctcgacacataaacgataggcactcttcacataatattttccattctttttagccttccaaattaaa 101  Q
    |||||| |||||||| ||||||||||||||||||||||| ||||||||  ||||| |||||||||  | ||||||||||||||||    
T  16322535 agaagagtcaataagctcctcgacacataaacgataggcgctcttcacggaatatcttccattctaatcagccttccaaattaaa 16322451  T

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Target: chr6; HSP #4
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 17 - 101
Target Start/End: Complemental strand, 16334683 - 16334599
Alignment:
Q  17 agaagattcaataagttcctcgacacataaacgataggcactcttcacataatattttccattctttttagccttccaaattaaa 101  Q
    |||||| |||||||| ||||||||||||||||||||||| ||||||||  ||||| |||||||||  | ||||||||||||||||    
T  16334683 agaagagtcaataagctcctcgacacataaacgataggcgctcttcacggaatatcttccattctaatcagccttccaaattaaa 16334599  T

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Target: chr6; HSP #5
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 226 - 330
Target Start/End: Complemental strand, 16344698 - 16344594
Alignment:
Q  226 agtagcatggtggacataatgtgcgcctacaatattagtagcgatgcattctccattcaagacccaaggttctcccaaaacagggatagatctgccggta 325  Q
    ||||||||| || ||||||||||| |||| ||||| | |||| || |  |||||||||||||||| |||||||||||||| |||||||||| |||| |||    
T  16344698 agtagcatgatgaacataatgtgcacctataatatcaatagcaatactctctccattcaagaccctaggttctcccaaaatagggatagatatgccagta 16344599  T
Q  326 cctat 330  Q
    |||||    
T  16344598 cctat 16344594  T

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Target: chr1 (Bit Score: 74; Significance: 7e-34; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 17 - 305
Target Start/End: Original strand, 13167130 - 13167419
Alignment:
Q  17 agaagattcaataagttcctcgacacataaacgataggcactcttcacataatattttccattctttttagccttccaaattaaatggtctgactataca 116  Q
    |||||| || ||||||||||||||||| |||||||| ||| |||||  | ||||||| |||| |||||  ||||||||||| |||||||| ||||  |||    
T  13167130 agaagaatctataagttcctcgacacacaaacgataagcaatcttcggagaatatttcccatgcttttctgccttccaaatcaaatggtccgactgcaca 13167229  T
Q  117 tgagcaacaagggacgtactcatgattttatctgctaattttgcactaaagacctgtctgacaac-acctcgttccatctcttctcatttgggagcatca 215  Q
    |||| || |||||  || |||||||||| |||| ||||||  |||||||| || ||| ||||||| ||||| ||||| ||||||||| |||| |  ||||    
T  13167230 tgagtaataaggggtgtgctcatgatttaatcttctaattcagcactaaaaacttgtttgacaactacctcattccacctcttctcagttggcactatca 13167329  T
Q  216 agttatcgatagtagcatggtggacataatgtgcgcctacaatattagtagcgatgcattctccattcaagacccaaggttctcccaaaa 305  Q
    |||| || || ||| ||||  | ||||| |||||  | || ||||||||| | ||||| ||||||||||  ||||| |||||||||||||    
T  13167330 agttttcaatggtaacatgacgaacatactgtgctacgacgatattagtatcaatgcactctccattcagaacccatggttctcccaaaa 13167419  T

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Target: chr1; HSP #2
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 17 - 314
Target Start/End: Original strand, 13151025 - 13151326
Alignment:
Q  17 agaagattcaataagttcctcgacacataaacgataggcactcttcacataatattttccattctttttagccttccaaattaaatggtctgactataca 116  Q
    |||||| || ||||||||||||||||| |||||||| ||| |||||  | ||||||| |||| |||||  ||||||||||| ||| |||| ||||  |||    
T  13151025 agaagaatctataagttcctcgacacacaaacgataagcaatcttcggagaatatttcccatgcttttctgccttccaaatcaaacggtccgactgcaca 13151124  T
Q  117 tgagcaacaagggacgta---ctcatgattttatctgctaattttgcactaaagacctgtctgacaac-acctcgttccatctcttctcatttgggagca 212  Q
    |||| || |||||  |||   |||||||||| |||| ||||||  |||||||| || ||| ||||||| ||||||||||| ||||||||| |||| |  |    
T  13151125 tgagtaataaggggtgtactgctcatgatttaatcttctaattcagcactaaaaacttgtttgacaactacctcgttccacctcttctcagttggcacta 13151224  T
Q  213 tcaagttatcgatagtagcatggtggacataatgtgcgcctacaatattagtagcgatgcattctccattcaagacccaaggttctcccaaaacagggat 312  Q
    ||||||| || || ||| ||||  | ||||| |||||  | || ||||||||| | ||||| ||||||||||  ||||| ||||||||||||| ||| ||    
T  13151225 tcaagttttcaatggtaacatgacgaacatattgtgctacgacgatattagtatcaatgcactctccattcagaacccatggttctcccaaaataggaat 13151324  T
Q  313 ag 314  Q
    ||    
T  13151325 ag 13151326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 17 - 207
Target Start/End: Original strand, 13179275 - 13179465
Alignment:
Q  17 agaagattcaataagttcctcgacacataaacgataggcactcttcacataatattttccattctttttagccttccaaattaaatggtctgactataca 116  Q
    |||||| || ||||||||||||||||| |||||||| |||||||||  | ||||||| |||| |||||  ||||||||||| ||| |||||||||  |||    
T  13179275 agaagaatctataagttcctcgacacacaaacgataagcactcttcgtagaatatttcccatgcttttctgccttccaaataaaacggtctgactgcaca 13179374  T
Q  117 tgagcaacaagggacgtactcatgattttatctgctaattttgcactaaagacctgtctgacaac-acctcgttccatctcttctcatttgg 207  Q
    |||| || |||||  || ||| |||||| |||| ||||||  |||||||| || | | ||||||| | ||||||||| ||||||||| ||||    
T  13179375 tgagtaataaggggtgtgctcgtgatttaatcttctaattcagcactaaa-acttatttgacaactaactcgttccacctcttctcagttgg 13179465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 24 - 203
Target Start/End: Original strand, 44313856 - 44314036
Alignment:
Q  24 tcaataagttcctcgacacataaacgataggcactcttcacataatattttccattctttttagccttccaaattaaatggtctgactatacatgagcaa 123  Q
    ||||| |||||||||||||| |  || || |||||||||||  ||||||| || ||  ||| ||| ||||| || | | |||| || | |||||||||||    
T  44313856 tcaatgagttcctcgacacacaggcggtaagcactcttcactgaatatttcccgtttctttcagctttccagatcagacggtcagattgtacatgagcaa 44313955  T
Q  124 caagggacgtactcatgattttatctgctaattttgcactaaagacctgtctgacaaca-cctcgttccatctcttctcat 203  Q
    ||||||  || || |  ||||||| ||||||||  |||||||| ||||||||||||  |  ||| ||||||||||||||||    
T  44313956 caaggggtgtgctaagaattttatttgctaattcagcactaaaaacctgtctgacagtagtctcattccatctcttctcat 44314036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 51; Significance: 4e-20; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 30 - 152
Target Start/End: Original strand, 30678087 - 30678209
Alignment:
Q  30 agttcctcgacacataaacgataggcactcttcacataatattttccattctttttagccttccaaattaaatggtctgactatacatgagcaacaaggg 129  Q
    |||||||||||||| |||||||| |||||||| ||||||||||| |||| ||||| | |||||||||| ||  ||||| ||||  |||||| ||  ||||    
T  30678087 agttcctcgacacaaaaacgataagcactctttacataatatttcccatgcttttcatccttccaaatcaagcggtctaactacgcatgagaaatgaggg 30678186  T
Q  130 acgtactcatgattttatctgct 152  Q
     ||| ||||||||||||||||||    
T  30678187 gcgtgctcatgattttatctgct 30678209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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