View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6499_low_9 (Length: 335)
Name: NF6499_low_9
Description: NF6499
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6499_low_9 |
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Alignment Details
Target: chr5 (Bit Score: 297; Significance: 1e-167; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 297; E-Value: 1e-167
Query Start/End: Original strand, 1 - 325
Target Start/End: Original strand, 3083978 - 3084302
Alignment:
| Q |
1 |
tgactaaatatgagtactaaaatgttaatttcctcactcttttcctatttattttggtgacttggtccatgtaataattattttgagaatgcatggtgta |
100 |
Q |
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| T |
3083978 |
tgactaaatatgagtactaaaatgttaatttcctcactcttttcccatttattttggtgacttggtccatgtaataattattttgtgaatgcatggtgta |
3084077 |
T |
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| Q |
101 |
tgatattaaacagaaagatcaaattcaaggcctgttgcacatggagttctattcaaggatgcgcgagggacagaacacagagcatacttgagtcatggga |
200 |
Q |
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| T |
3084078 |
tgatattaaacagaaagatcaaattcaaggcctgttgcacatggagttctatacaaggatgcacgagggacagaacacagggcatacttgaatcatggga |
3084177 |
T |
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| Q |
201 |
ctaagaatgagatcatagtatcagctggtgcactaggtagcccacaacttctgatgttgagtggaattggagcagcacatcaccttagggaacacaacat |
300 |
Q |
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| T |
3084178 |
ctaagaatgagatcatagtatcagctggtgcactaggtagcccacaacttctgatgttgagtggaattggagcaggacatcaccttagggaacacaacat |
3084277 |
T |
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| Q |
301 |
cagtgtagtgttagatcaacctttg |
325 |
Q |
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| T |
3084278 |
cagtgtagtgttagatcaacctttg |
3084302 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 164; E-Value: 1e-87
Query Start/End: Original strand, 46 - 321
Target Start/End: Original strand, 3092903 - 3093178
Alignment:
| Q |
46 |
tatttattttggtgacttggtccatgtaataattattttgagaatgcatggtgtatgatattaaacagaaagatcaaattcaaggcctgttgcacatgga |
145 |
Q |
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| T |
3092903 |
tatttattttgttgtctcggtccatttaatgatgattatgtgaatacattgtgcatgatatcaaacaggtggattaagttcaaagccaattgcacatgga |
3093002 |
T |
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| Q |
146 |
gttctattcaaggatgcgcgagggacagaacacagagcatacttgagtcatgggactaagaatgagatcatagtatcagctggtgcactaggtagcccac |
245 |
Q |
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| T |
3093003 |
gttctatacaaggatgcacgagggacagaacacagggcatacttgaatcatgggactaagaatgagatcatagtatcagctggtgcactaggtagcccac |
3093102 |
T |
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| Q |
246 |
aacttctgatgttgagtggaattggagcagcacatcaccttagggaacacaacatcagtgtagtgttagatcaacc |
321 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| | |||| |||||||||||||||||| ||||||| |
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| T |
3093103 |
aacttctgatgttgagtggaattggagcagcacatcaccttaagcaacataacatcagtgtagtgttacatcaacc |
3093178 |
T |
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