View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6500_high_11 (Length: 210)

Name: NF6500_high_11
Description: NF6500
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6500_high_11
NF6500_high_11
[»] chr5 (8 HSPs)
chr5 (1-192)||(1757930-1758123)
chr5 (35-192)||(29568537-29568696)
chr5 (49-192)||(29569859-29570004)
chr5 (1-87)||(29168141-29168230)
chr5 (84-138)||(29425182-29425236)
chr5 (81-150)||(29166860-29166929)
chr5 (95-190)||(27918481-27918573)
chr5 (1-43)||(27918583-27918625)
[»] chr4 (4 HSPs)
chr4 (1-192)||(27461782-27461975)
chr4 (1-192)||(27481921-27482114)
chr4 (1-192)||(18985882-18986075)
chr4 (1-150)||(27521460-27521609)
[»] chr3 (1 HSPs)
chr3 (1-114)||(25518343-25518459)


Alignment Details
Target: chr5 (Bit Score: 171; Significance: 5e-92; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 171; E-Value: 5e-92
Query Start/End: Original strand, 1 - 192
Target Start/End: Complemental strand, 1758123 - 1757930
Alignment:
Q  1 tggtgaacagcgtttgacagagtttttgtgagagtgatgatgaagcattgatgatgttggaataatcatggattgtttctgtttgtgagggatcaacaag 100  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  1758123 tggtgaacggcgtttgacagagtttttgtgagagtgatgatgaagcattgatgatgttggaataatcatggattgtttctgtttgtgagggatcaacatg 1758024  T
Q  101 gattcttgttgaatctgtaaatcacccattcttctgaactcttttc--ttttgtttttagatttgaatttgaactttggttgtaaagtaagtgt 192  Q
    |||||||||||||||||||||||||||||||||||||||| |||||  ||||||||||||||||||||||||||||||||||||||||||||||    
T  1758023 gattcttgttgaatctgtaaatcacccattcttctgaactgttttcttttttgtttttagatttgaatttgaactttggttgtaaagtaagtgt 1757930  T

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Target: chr5; HSP #2
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 35 - 192
Target Start/End: Original strand, 29568537 - 29568696
Alignment:
Q  35 tgatgatgaagcattgatgatgttggaataatcatggattgtttctgtttgtgagggatcaacaaggattcttgttgaatctgtaaatcacccattcttc 134  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||| |||| |||    
T  29568537 tgatgatgaagcattgatgatgttggaataatcatggattgtttctgtttgtgagggatcaacatggattcttgttgaatctgtagatcactcatttttc 29568636  T
Q  135 tgaactcttttc--ttttgtttttagatttgaatttgaactttggttgtaaagtaagtgt 192  Q
    |||| |  ||||  |||||||||| |||||||||||||| ||||||||||||||||||||    
T  29568637 tgaattgctttcttttttgtttttggatttgaatttgaattttggttgtaaagtaagtgt 29568696  T

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Target: chr5; HSP #3
Raw Score: 79; E-Value: 4e-37
Query Start/End: Original strand, 49 - 192
Target Start/End: Original strand, 29569859 - 29570004
Alignment:
Q  49 tgatgatgttggaataatcatggattgtttctgtttgtgagggatcaacaaggattcttgttgaatctgtaaatcacccattcttctgaactcttttc-- 146  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||| | |||||||||||||||||||| | ||| | |||||||  | | |||||      
T  29569859 tgatgatgttggaataatcatggattgtttgtgtttgtgagggatcaaaatggattcttgttgaatctgtagaccactcgttcttctagattgttttctt 29569958  T
Q  147 ttttgtttttagatttgaatttgaactttggttgtaaagtaagtgt 192  Q
    |||||||||| ||||||||||||||||||||| ||||||| |||||    
T  29569959 ttttgtttttggatttgaatttgaactttggtagtaaagttagtgt 29570004  T

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Target: chr5; HSP #4
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 1 - 87
Target Start/End: Complemental strand, 29168230 - 29168141
Alignment:
Q  1 tggtgaacagcgtttgacagagtttttgtgagagtgatgatga---agcattgatgatgttggaataatcatggattgtttctgtttgtg 87  Q
    ||||||||  |||||||||||||| ||||||| ||||||||||   |||||||||||||||||||||||||||  |||||||||||||||    
T  29168230 tggtgaacgacgtttgacagagttgttgtgagtgtgatgatgatgaagcattgatgatgttggaataatcatgctttgtttctgtttgtg 29168141  T

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Target: chr5; HSP #5
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 84 - 138
Target Start/End: Complemental strand, 29425236 - 29425182
Alignment:
Q  84 tgtgagggatcaacaaggattcttgttgaatctgtaaatcacccattcttctgaa 138  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  29425236 tgtgagggatcaacatggattcttgttgaatctgtaaatcacccattcttctgaa 29425182  T

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Target: chr5; HSP #6
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 81 - 150
Target Start/End: Complemental strand, 29166929 - 29166860
Alignment:
Q  81 gtttgtgagggatcaacaaggattcttgttgaatctgtaaatcacccattcttctgaactcttttctttt 150  Q
    ||||||||||||||| || |||||||||||||||||||| ||||| ||||||||| || | |||||||||    
T  29166929 gtttgtgagggatcatcatggattcttgttgaatctgtagatcactcattcttctcaattgttttctttt 29166860  T

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Target: chr5; HSP #7
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 95 - 190
Target Start/End: Complemental strand, 27918573 - 27918481
Alignment:
Q  95 aacaaggattcttgttgaatctgtaaatcacccattcttctgaactcttttcttttgtttttagatttgaatttgaactttggttgtaaagtaagt 190  Q
    |||| |||||||||||||||||||| ||||| |||||| ||||| | ||| || ||  |||| ||||||||||||||||||||||| |||||||||    
T  27918573 aacatggattcttgttgaatctgtagatcactcattctgctgaattgttt-ctgtt--ttttggatttgaatttgaactttggttgcaaagtaagt 27918481  T

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Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 43
Target Start/End: Complemental strand, 27918625 - 27918583
Alignment:
Q  1 tggtgaacagcgtttgacagagtttttgtgagagtgatgatga 43  Q
    |||||||| ||||||||||||||| ||||||| ||||||||||    
T  27918625 tggtgaactgcgtttgacagagttgttgtgagtgtgatgatga 27918583  T

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Target: chr4 (Bit Score: 151; Significance: 4e-80; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 151; E-Value: 4e-80
Query Start/End: Original strand, 1 - 192
Target Start/End: Complemental strand, 27461975 - 27461782
Alignment:
Q  1 tggtgaacagcgtttgacagagtttttgtgagagtgatgatgaagcattgatgatgttggaataatcatggattgtttctgtttgtgagggatcaacaag 100  Q
    |||||||| ||||||||||| ||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  27461975 tggtgaacggcgtttgacagtgttgttgtgagtgtgatgatgaagcattgatgatgttggaataatcatggattgtttctgtttgtgagggatcaacatg 27461876  T
Q  101 gattcttgttgaatctgtaaatcacccattcttctgaactcttt--tcttttgtttttagatttgaatttgaactttggttgtaaagtaagtgt 192  Q
    |||||||||||||||||||||||||||||||||||||| | |||  |||||||||||||||||||||||||||||||| |||||||||||||||    
T  27461875 gattcttgttgaatctgtaaatcacccattcttctgaattgttttctcttttgtttttagatttgaatttgaactttgattgtaaagtaagtgt 27461782  T

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Target: chr4; HSP #2
Raw Score: 143; E-Value: 3e-75
Query Start/End: Original strand, 1 - 192
Target Start/End: Complemental strand, 27482114 - 27481921
Alignment:
Q  1 tggtgaacagcgtttgacagagtttttgtgagagtgatgatgaagcattgatgatgttggaataatcatggattgtttctgtttgtgagggatcaacaag 100  Q
    |||||||| ||||||||||| ||| ||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  27482114 tggtgaacggcgtttgacagtgttgttgtgagtgtgatgatgaggcattgatgatgttggaataatcatggattgtttctgtttgtgagggatcaacatg 27482015  T
Q  101 gattcttgttgaatctgtaaatcacccattcttctgaactcttt--tcttttgtttttagatttgaatttgaactttggttgtaaagtaagtgt 192  Q
    |||||||||||||||||||||||||||||||||||||| | |||  | |||||||||||||||||||||||| |||||||||||||||||||||    
T  27482014 gattcttgttgaatctgtaaatcacccattcttctgaattgttttgttttttgtttttagatttgaatttgagctttggttgtaaagtaagtgt 27481921  T

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Target: chr4; HSP #3
Raw Score: 139; E-Value: 6e-73
Query Start/End: Original strand, 1 - 192
Target Start/End: Complemental strand, 18986075 - 18985882
Alignment:
Q  1 tggtgaacagcgtttgacagagtttttgtgagagtgatgatgaagcattgatgatgttggaataatcatggattgtttctgtttgtgagggatcaacaag 100  Q
    |||||||||| ||||||||| ||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |    
T  18986075 tggtgaacagagtttgacagtgttgttgtgagggtgatgatgaagcattgatgatgttggaataatcatggattgtttctgtttgtgagggatcaccatg 18985976  T
Q  101 gattcttgttgaatctgtaaatcacccattcttctgaactcttttc--ttttgtttttagatttgaatttgaactttggttgtaaagtaagtgt 192  Q
    |||||||||||||| ||||||||||||||||||||||| | |||||  |||| ||||||||||||||||||||||||||| |||||||||||||    
T  18985975 gattcttgttgaatttgtaaatcacccattcttctgaattgttttcttttttctttttagatttgaatttgaactttggtcgtaaagtaagtgt 18985882  T

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Target: chr4; HSP #4
Raw Score: 126; E-Value: 4e-65
Query Start/End: Original strand, 1 - 150
Target Start/End: Original strand, 27521460 - 27521609
Alignment:
Q  1 tggtgaacagcgtttgacagagtttttgtgagagtgatgatgaagcattgatgatgttggaataatcatggattgtttctgtttgtgagggatcaacaag 100  Q
    |||||||| ||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  27521460 tggtgaacggcgtttgacagagttgttgtgagtgtgatgatgaagcattgatgatgttggaataatcatggattgtttctgtttgtgagggatcaacatg 27521559  T
Q  101 gattcttgttgaatctgtaaatcacccattcttctgaactcttttctttt 150  Q
    |||||||||||||||||||||||||||||||||||||| | |||||||||    
T  27521560 gattcttgttgaatctgtaaatcacccattcttctgaattgttttctttt 27521609  T

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Target: chr3 (Bit Score: 87; Significance: 7e-42; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 87; E-Value: 7e-42
Query Start/End: Original strand, 1 - 114
Target Start/End: Complemental strand, 25518459 - 25518343
Alignment:
Q  1 tggtgaacagcgtttgacagagtttttgtgagagtgatgatga---agcattgatgatgttggaataatcatggattgtttctgtttgtgagggatcaac 97  Q
    |||||||| ||||||||||||||| ||||||| ||||||||||   ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25518459 tggtgaacggcgtttgacagagttgttgtgagtgtgatgatgaccaagcattgatgatgttggaataatcatggattgtttctgtttgtgagggatcaac 25518360  T
Q  98 aaggattcttgttgaat 114  Q
    | |||||||||||||||    
T  25518359 atggattcttgttgaat 25518343  T

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