View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6500_high_3 (Length: 612)
Name: NF6500_high_3
Description: NF6500
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6500_high_3 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 541; Significance: 0; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 541; E-Value: 0
Query Start/End: Original strand, 18 - 602
Target Start/End: Complemental strand, 51419000 - 51418409
Alignment:
| Q |
18 |
gataacagaaaagtacgaaaatacattgcattgcagaccattaataataacgcatctacaa----ctacagtctacaggtaaggtaatcaacaacat--- |
110 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
51419000 |
gataacagaaaagtacgaaaatacattgcattgcagaccattaataataacgcatctacaaacaactacagtctacaggtaaggtaatcaacaacattaa |
51418901 |
T |
|
| Q |
111 |
caggagctgcagaaatagagttgtttgtttgttatttgagcttcaatatgattcacctgccacatgcatgcacatgatgttttacctgctgggtcaaaca |
210 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
51418900 |
caggagctgcagaaatagagttgtttgtttgttatttgagcttcaatatgattcacctgccacatgcatgcacatgatgttttacctactgggtcaaaca |
51418801 |
T |
|
| Q |
211 |
caacacaacatgtgacacatcaccattaatagtgataatgatgatccaaccatttctgcaacctcaactctctgtaaaacctctctatgaactcctctgc |
310 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
51418800 |
caacacaacatgtgacacatcaccattaatagtgataatgatgatccaaccatttctgcaacctcaactctctgtaaaacctctctatgaactcctctgc |
51418701 |
T |
|
| Q |
311 |
cgcttggtccacctcaaacacctcctcaaccgtctcccttttcgtcatcttcacgcgcctcccttcatttctggttccataatacaccctcatttgccgg |
410 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
51418700 |
cgcttgatccacctcaaacacctcctcaaccgtctcccttttcgtcatcttcacgcgcctcccttcatttctggttccataatacaccctcatttgccgg |
51418601 |
T |
|
| Q |
411 |
cgactgcgttctgcaaccggagataatagcttcctcctactactgtttacaccacgagagagacgcggtggactgctgctacagctgaactgatactcca |
510 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
51418600 |
cgactgcgttctgccaccggagataatagcttcctcctactactgtttgcaccacgagagagacgcggtggactgctgctacagctgaactgatactcca |
51418501 |
T |
|
| Q |
511 |
acggtgaaatgaaatacatatcagcatcacgtggacggcacgtgagtgcttcatggtgcttcaccatcacgttgttcagtgctttccctatg |
602 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
51418500 |
acggtgaaataaaatacatatcagcatcacgtggacggcacgtgagtgcttcatggtgcttcaccatcacgttgttcagtgctttccctatg |
51418409 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 121; E-Value: 1e-61
Query Start/End: Original strand, 427 - 602
Target Start/End: Complemental strand, 51413534 - 51413356
Alignment:
| Q |
427 |
ccggagataatagcttcctcctactactgtttacaccac---gagagagacgcggtggactgctgctacagctgaactgatactccaacggtgaaatgaa |
523 |
Q |
| |
|
||||||| || |||||||||||||||||| | | |||| |||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
51413534 |
ccggagacaaaagcttcctcctactactgctggcgccaccgcgagagagacgaggtggactgctactacagctgaactgatactccaacggtgaaatgaa |
51413435 |
T |
|
| Q |
524 |
atacatatcagcatcacgtggacggcacgtgagtgcttcatggtgcttcaccatcacgttgttcagtgctttccctatg |
602 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||| ||||||||||||| |
|
|
| T |
51413434 |
atacatatcagcatcacgtggtcggcacgtgagtgcttcatggtgcttcaccatcacgctgttcaatgctttccctatg |
51413356 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 427 - 532
Target Start/End: Complemental strand, 51416581 - 51416472
Alignment:
| Q |
427 |
ccggagataatagcttcctcctactactgtttacacca----cgagagagacgcggtggactgctgctacagctgaactgatactccaacggtgaaatga |
522 |
Q |
| |
|
|||||||||||||||| |||||||| ||| || ||||| |||| |||| |||||||| |||||||||||||||||||||| ||||||||||||| || |
|
|
| T |
51416581 |
ccggagataatagctttctcctactgctgcttgcaccatgcacgagtgagatgcggtggattgctgctacagctgaactgatattccaacggtgaaacga |
51416482 |
T |
|
| Q |
523 |
aatacatatc |
532 |
Q |
| |
|
|||||||||| |
|
|
| T |
51416481 |
aatacatatc |
51416472 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 248 - 319
Target Start/End: Complemental strand, 51413716 - 51413645
Alignment:
| Q |
248 |
atgatgatccaaccatttctgcaacctcaactctctgtaaaacctctctatgaactcctctgccgcttggtc |
319 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||||||| | ||||||||||| || ||||| ||||| |
|
|
| T |
51413716 |
atgatgatccaaccatttctgcaacctcaattctctgtaaaacttttctatgaactcttccgccgcctggtc |
51413645 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 352 - 409
Target Start/End: Complemental strand, 51416639 - 51416582
Alignment:
| Q |
352 |
tcgtcatcttcacgcgcctcccttcatttctggttccataatacaccctcatttgccg |
409 |
Q |
| |
|
|||||||||| |||||||||| |||||||||||||||| | | |||||||||| ||| |
|
|
| T |
51416639 |
tcgtcatctttacgcgcctccattcatttctggttccacgacataccctcatttaccg |
51416582 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 59; Significance: 1e-24; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 501 - 571
Target Start/End: Complemental strand, 29323760 - 29323690
Alignment:
| Q |
501 |
tgatactccaacggtgaaatgaaatacatatcagcatcacgtggacggcacgtgagtgcttcatggtgctt |
571 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||| |||||||| |
|
|
| T |
29323760 |
tgatactccaacggtgaaacgaaatacatatcagcatcacgtggacggcacatgagtgcttcgtggtgctt |
29323690 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University