View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6500_high_7 (Length: 274)
Name: NF6500_high_7
Description: NF6500
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6500_high_7 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 177; Significance: 2e-95; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 18 - 263
Target Start/End: Original strand, 29722687 - 29722931
Alignment:
| Q |
18 |
caatatttacaagggtctatacaggcacatctcaaattccttctgttaaccaaattgtgactaaaacaataagtcagattccttggataatggacacagc |
117 |
Q |
| |
|
||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29722687 |
caatatttacaagggtctatacaggcacatctccaagtccttctgttaaccaaattgtgactaaaacaataagtcagattccttggataatggacacagc |
29722786 |
T |
|
| Q |
118 |
tacacaagagtcatgcatcaagttaaccaaactcttgaacnnnnnnnnggttcagtgcaataaaagtgaggaattgagtgagtcacagggcattattggt |
217 |
Q |
| |
|
|||||| ||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29722787 |
cacacaa-agtcatgcatcaagttagccaaactcttgaacttttttttggttcagtgcaataaaagtgaggaattgagtgagtcacagggcattattggt |
29722885 |
T |
|
| Q |
218 |
aaagtgagtgatgtannnnnnnaatctaacaactcggtatattcat |
263 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
29722886 |
aaagtgagtgatgtatttttttaatctaacaactcggtatattcat |
29722931 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 39 - 204
Target Start/End: Complemental strand, 29737487 - 29737322
Alignment:
| Q |
39 |
caggcacatctcaaattccttctgttaaccaaattgtgactaaaacaataagtcagattccttggataatggacacagctacacaagagtcatgcatcaa |
138 |
Q |
| |
|
||||||||||||||| || |||||||||||||| ||||||| || |||||||||||||||||| ||||||||||||||| |||||||||||||||||||| |
|
|
| T |
29737487 |
caggcacatctcaaaatctttctgttaaccaaaatgtgacttaagcaataagtcagattcctttgataatggacacagccacacaagagtcatgcatcaa |
29737388 |
T |
|
| Q |
139 |
gttaaccaaactcttgaacnnnnnnnnggttcagtgcaataaaagtgaggaattgagtgagtcaca |
204 |
Q |
| |
|
|||| |||||||||||||| ||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
29737387 |
gttagccaaactcttgaacttttttctggttcagtgcaatcaaagtgaggaattgagtgagtcaca |
29737322 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University