View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6500_low_1 (Length: 887)
Name: NF6500_low_1
Description: NF6500
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6500_low_1 |
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Alignment Details
Target: chr1 (Bit Score: 339; Significance: 0; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 339; E-Value: 0
Query Start/End: Original strand, 406 - 869
Target Start/End: Complemental strand, 12224082 - 12223621
Alignment:
| Q |
406 |
aattattgctacaaaatgttcactctacattagagtaacttgttgcaacaaagtaaaaataacagaatccatattataataatcttgatgaagcgcactg |
505 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||| |
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| T |
12224082 |
aattattgctacaaaatgttcactctacattagagtaatttgttgcaacaaagtaaaaataacataatccatattataat---cttgatgaagcgcactg |
12223986 |
T |
|
| Q |
506 |
tcaatcttaattaacccataaattcaccgcacgtcaaacttgcacgacaatcagacattcctataaaacatgaatgttgtcc-cttaattatttccaaaa |
604 |
Q |
| |
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||||||||||||| |||||||||| ||||||| ||||||||||||||| ||||||||||| |||||||||||||||||||| | ||||||||||||||| |
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|
| T |
12223985 |
tcaatcttaattatcccataaatttaccgcacaccaaacttgcacgacagtcagacattccaataaaacatgaatgttgtcctcgtaattatttccaaaa |
12223886 |
T |
|
| Q |
605 |
attacatgttcggttggacaagacacacctacacgttgtagggagctttcatgttccaaattaaatcccaacgatctgatttatgcaaatgagtattgtc |
704 |
Q |
| |
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|||||| ||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||| |
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| T |
12223885 |
attacacattcagatggacaagacacacctacacgttgtagggagctttcatgttccaaattaaatcccaacgacccgatttatgcaaatgagtattgtc |
12223786 |
T |
|
| Q |
705 |
aacaatttcattcatacatattctataaacattacaaacagaatacttatcatttttctcagtcttccaaaccaatctaccctctgtgactaaagggtga |
804 |
Q |
| |
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|||||||||||||||||||||| | ||| || |||||||||||||| || ||||||| ||||||||||||||||||||| |||| ||||||||||||||| |
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| T |
12223785 |
aacaatttcattcatacatattttgtaagcactacaaacagaatacctaccatttttgtcagtcttccaaaccaatctatcctccgtgactaaagggtga |
12223686 |
T |
|
| Q |
805 |
agcgggtattcacaatcaaatgggcagtatgttgatcaaataagatataaattaaaggagcattc |
869 |
Q |
| |
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|| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
12223685 |
agggggtattcacaatcaaatgggtagtatgttgatcaaataagatataaattaaaggagcattc |
12223621 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 1 - 369
Target Start/End: Complemental strand, 12224476 - 12224103
Alignment:
| Q |
1 |
tatgtcctaaaagaataacaaccttcttagaatctaacacaaaatctacattattgaactgaaggtttgccacccaatcaagtgtcgtatataaacttgt |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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|
| T |
12224476 |
tatgtcctaaaagaataacaaccttcttagaatctaacagaaaatctacattattgaactgaaggtttggcacccaatcaagtgtcgtatataaacttgt |
12224377 |
T |
|
| Q |
101 |
tgcatcgacgtcacaaaatggggagaaccaagtagtttatgcaatcataaattttccttcttcatctctaagacacattctaagttctagcttattgaac |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||| |||||| |
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|
| T |
12224376 |
tgcatcgacgtcacaaaatggggagaaccaagtagtttatgcaatcataaattttccttcttcatctctaagacacattctaagtcctaccttgttgaac |
12224277 |
T |
|
| Q |
201 |
aa---------cgagtcatatatattgcatttataccttccaagggcccatttttgaccatcggtgataagctatacgagatggtccatgtggatcagaa |
291 |
Q |
| |
|
|| |||| |||||||||||||||||| ||||||||||| ||||||| ||||| |||| |||||||| |||| || ||||||||||||||| |
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|
| T |
12224276 |
aacgaggagaacgagacatatatattgcatttat---ttccaagggcctatttttgcccatcagtgagaagctataagagacggcccatgtggatcagaa |
12224180 |
T |
|
| Q |
292 |
gtagagggagttgcaccgcttgagcgaataacttgagcatgtctccattcttccatcaactactttgcatgctatata |
369 |
Q |
| |
|
||| |||||||| |||| | ||||||||||||||||||| ||||||| ||||||||||| ||||||||| |||||||| |
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|
| T |
12224179 |
gtaaagggagtttcaccacctgagcgaataacttgagcacgtctcca-tcttccatcaaatactttgcacgctatata |
12224103 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 65; E-Value: 4e-28
Query Start/End: Original strand, 645 - 869
Target Start/End: Complemental strand, 12225981 - 12225770
Alignment:
| Q |
645 |
gggagctttcatgttccaaattaaatcccaacgatctgatttatgcaaatgagtattgtcaacaatttcattcatacatattctataaacattacaaaca |
744 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||| ||||| |||||||||||||||||||||||| |||||||||||||| ||| || | | |
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|
| T |
12225981 |
gggagctttgatgttccaaattaaatcccaacgatccagtttatccaaatgagtattgtcaacaatttcgttcatacatattctgtaagcactgc----- |
12225887 |
T |
|
| Q |
745 |
gaatacttatcatttttctcagtcttccaaaccaatctaccctctgtgactaaagggtgaa-gcgggtattcacaatcaaatgggcagtatgttgatcaa |
843 |
Q |
| |
|
|||| |||||||| ||||||||||||| || ||| |||||||||||| |||| | |||||||||||||| ||| | || ||| |||||||| |
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|
| T |
12225886 |
-gatac-------ctttctcagccttccaaaccaatatatcctttgtgactaaaggatgaaggagggtattcacaatcgaat-gacaatatcttgatcaa |
12225796 |
T |
|
| Q |
844 |
ataagatataaattaaaggagcattc |
869 |
Q |
| |
|
||||| |||| ||||||||||||||| |
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|
| T |
12225795 |
ataagttatacattaaaggagcattc |
12225770 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 18 - 97
Target Start/End: Original strand, 23316277 - 23316356
Alignment:
| Q |
18 |
acaaccttcttagaatctaacacaaaatctacattattgaactgaaggtttgccacccaatcaagtgtcgtatataaact |
97 |
Q |
| |
|
|||||||||||||| || ||||||||||||||||||| ||||| ||| ||| |||||||||||||| ||| |||||||| |
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|
| T |
23316277 |
acaaccttcttagagtcgaacacaaaatctacattatggaactaaagatttaccacccaatcaagttccgtttataaact |
23316356 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 422 - 469
Target Start/End: Complemental strand, 12226267 - 12226220
Alignment:
| Q |
422 |
tgttcactctacattagagtaacttgttgcaacaaagtaaaaataaca |
469 |
Q |
| |
|
|||||||||| |||||| ||| ||||||||||||||||||||||||| |
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|
| T |
12226267 |
tgttcactctgtattagattaagttgttgcaacaaagtaaaaataaca |
12226220 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 103; Significance: 9e-51; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 103; E-Value: 9e-51
Query Start/End: Original strand, 650 - 868
Target Start/End: Original strand, 9170953 - 9171171
Alignment:
| Q |
650 |
ctttcatgttccaaattaaatcccaacgatctgatttatgcaaatgagtattgtcaacaatttcattcatacatattctataaacattacaaacagaata |
749 |
Q |
| |
|
|||| |||||||||||||||||||||| | | ||||||||||| |||||||||||||||||||| |||||||||||| | ||| |||||| ||| ||||| |
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|
| T |
9170953 |
ctttaatgttccaaattaaatcccaacaacccgatttatgcaagtgagtattgtcaacaatttctttcatacatattatgtaagcattacgaacggaata |
9171052 |
T |
|
| Q |
750 |
cttatcatttttctcagtcttccaaaccaatctaccctctgtgactaaagggtgaagcgggtattcacaatcaaatgggcagtatgttgatcaaataaga |
849 |
Q |
| |
|
| || |||||||| || ||| |||| ||||||| ||| |||||| ||||| ||||| ||||||||||| |||||| || |||||||||||||||| || |
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|
| T |
9171053 |
cataccatttttcccaacctttcaaatcaatctatcctatgtgacgaaaggatgaagggggtattcacagtcaaatcggtagtatgttgatcaaatgagt |
9171152 |
T |
|
| Q |
850 |
tataaattaaaggagcatt |
868 |
Q |
| |
|
|| |||||||||||||||| |
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|
| T |
9171153 |
tagaaattaaaggagcatt |
9171171 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 53; E-Value: 6e-21
Query Start/End: Original strand, 391 - 485
Target Start/End: Original strand, 9170632 - 9170728
Alignment:
| Q |
391 |
gttttcataggctcca-attattgctacaaaatgttcactctacattagagtaa-cttgttgcaacaaagtaaaaataacagaatccatattataat |
485 |
Q |
| |
|
|||| ||||||||||| | ||||||||||||||| ||||||| |||| |||||| |||||||||||||||||||||||||| ||| ||||||||||| |
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|
| T |
9170632 |
gtttccataggctccatagtattgctacaaaatggtcactctgcattggagtaagcttgttgcaacaaagtaaaaataacataattcatattataat |
9170728 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 78; Significance: 7e-36; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 78; E-Value: 7e-36
Query Start/End: Original strand, 376 - 634
Target Start/End: Original strand, 38246633 - 38246886
Alignment:
| Q |
376 |
gtttcaagtttatgtgttttcataggctcca-attattgctacaaaatgttcactctacattagagtaacttgttgcaacaaagtaaaaataacagaatc |
474 |
Q |
| |
|
|||||| |||| |||||| ||||||||||| | ||||||| |||||| |||||||| ||| |||||| ||||||| ||||||||||||||||||||| |
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|
| T |
38246633 |
gtttcaggtttctgtgttcccataggctccatagtattgctgcaaaattttcactctgtattggagtaagttgttgctacaaagtaaaaataacagaatt |
38246732 |
T |
|
| Q |
475 |
catattataataatcttgatgaagcgcactgtcaatcttaattaacccataaattcaccgcacgtcaaacttgcacgacaatcagacattcctataaaac |
574 |
Q |
| |
|
|||||| |||||| ||| ||||| ||| |||||| ||| ||||||||||||| ||| | ||||||||||| || ||| |||||| ||||||| |
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|
| T |
38246733 |
catatt---ataatcctgacgaagcacacgatcaatc----ttatcccataaattcacggcatgccaaacttgcacagcactcaagcattccaataaaac |
38246825 |
T |
|
| Q |
575 |
atgaatgttgtcc-cttaattatttccaaaaattacatgttcggttggacaagacacacct |
634 |
Q |
| |
|
||||||| ||||| | |||||||||| | |||||||| |||||||||||||||||||||| |
|
|
| T |
38246826 |
atgaatgatgtcctcgtaattatttctacaaattacacattcggttggacaagacacacct |
38246886 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 72; E-Value: 3e-32
Query Start/End: Original strand, 17 - 369
Target Start/End: Original strand, 38246231 - 38246598
Alignment:
| Q |
17 |
aacaaccttcttagaatctaacacaaaatctacattattgaactgaaggtttgccacccaatcaagtgtcgtatataaacttgtt---------gcatcg |
107 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||| ||||||| || |||| | |
|
|
| T |
38246231 |
aacaaccttcttagaatctaacacaaagtctacattatcaaactgaaggtttgccacccaatcaagtgtcgtacataaactcattgcttcacccgcattg |
38246330 |
T |
|
| Q |
108 |
acgtcacaaaatggggagaaccaagtagtttatgcaatcataaattttccttcttcatctctaagacacattctaagttctagcttatt---------ga |
198 |
Q |
| |
|
|||||||||| ||||||||||| ||| ||| ||||| |||||| || || ||||| ||||||| |||||| |||| ||| |||||| | |
|
|
| T |
38246331 |
acgtcacaaagcggggagaaccaggtactttttgcaagcataaaattaccctcttcgcctctaag--acattccaagtcctaccttattaagcgacgagg |
38246428 |
T |
|
| Q |
199 |
acaacgagtcatatatattgcatttataccttccaagggcccatttttgaccatcggtgataagctatacgagatggtccatgtggatcagaagtagagg |
298 |
Q |
| |
|
| |||||| ||| ||| || |||||||||||| | |||| || |||| |||| | | |||||||| ||| || ||||||||||||||| |||||| |
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|
| T |
38246429 |
agaacgaggcatctatttttcatttatacctt-ctaggggccggttttacccattgttaccaagctataagagtcggcccatgtggatcagaactagagg |
38246527 |
T |
|
| Q |
299 |
gagttgcaccgcttgagcgaataacttgagcatgtctccattcttccatcaactactttgcatgctatata |
369 |
Q |
| |
|
||||| ||| | | | ||||| ||||| |||||||||||||| |||||||||||||||||| ||| |||| |
|
|
| T |
38246528 |
gagttacactacctaaacgaatgacttgtgcatgtctccattcatccatcaactactttgcacgctctata |
38246598 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 60; E-Value: 4e-25
Query Start/End: Original strand, 645 - 728
Target Start/End: Original strand, 38246961 - 38247044
Alignment:
| Q |
645 |
gggagctttcatgttccaaattaaatcccaacgatctgatttatgcaaatgagtattgtcaacaatttcattcatacatattct |
728 |
Q |
| |
|
||||| ||| |||||||||||||| ||||||||| | ||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
38246961 |
gggagatttaatgttccaaattaagtcccaacgaccagatttatgcaaatgaatattgtcaacaatttcattcatacatattct |
38247044 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 813 - 868
Target Start/End: Original strand, 38247099 - 38247154
Alignment:
| Q |
813 |
ttcacaatcaaatgggcagtatgttgatcaaataagatataaattaaaggagcatt |
868 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||| ||||||||||| ||||||| |
|
|
| T |
38247099 |
ttcacagtcaaatgggcagtatgttgatcaaataagttataaattaaaagagcatt |
38247154 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 70
Target Start/End: Complemental strand, 46210752 - 46210682
Alignment:
| Q |
1 |
tatgtcctaaaagaata-acaaccttcttagaatctaacacaaaatctacattattgaactgaaggtttgc |
70 |
Q |
| |
|
|||||||||||| ||| |||||||||||||||||||| |||||||| ||||||| ||| ||||||||||| |
|
|
| T |
46210752 |
tatgtcctaaaataatcgacaaccttcttagaatctaaaacaaaatcaacattatcgaaatgaaggtttgc |
46210682 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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