View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6500_low_10 (Length: 250)
Name: NF6500_low_10
Description: NF6500
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6500_low_10 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 226; Significance: 1e-125; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 226; E-Value: 1e-125
Query Start/End: Original strand, 1 - 241
Target Start/End: Original strand, 28281617 - 28281858
Alignment:
| Q |
1 |
tgatttcctaataaaatatactaaa-tgatggatttcagatttgtggattagtcattcgtaattaaagcatacagggttagtgaatacattgtggaccga |
99 |
Q |
| |
|
||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
28281617 |
tgatttcctaataaaatatactaaaatgacggatttcagatttgtggattagtcattcgtaattaaagcatacagggttagtgaatacattgtggaccaa |
28281716 |
T |
|
| Q |
100 |
tatgtatttttctgttattcacaaatttgtgtagatggtttaacatagtattagtagattttgtttttcaaaaactattctctgaccacaactttaactt |
199 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28281717 |
tatgtatttttctgttattcacaaatttgtgtagatggtttaacatagtattagtagattttgtttttcaaaaactattctctgaccacaactttaactt |
28281816 |
T |
|
| Q |
200 |
aatttcagggcgttctcttgctgaatgctgttctcacaggtt |
241 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28281817 |
aatttcagggcgttctcttgctgaatgctgttctcacaggtt |
28281858 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 157 - 241
Target Start/End: Original strand, 28290039 - 28290122
Alignment:
| Q |
157 |
attttgtttttcaaaaactattctctgaccacaactttaacttaatttcagggcgttctcttgctgaatgctgttctcacaggtt |
241 |
Q |
| |
|
|||||||||||||||||||||||||||| |||| |||| | |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28290039 |
attttgtttttcaaaaactattctctgatcacagctttga-ttaatttcagggcgttctcttgctgaatgctgttctcacaggtt |
28290122 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 198 - 241
Target Start/End: Original strand, 28302890 - 28302933
Alignment:
| Q |
198 |
ttaatttcagggcgttctcttgctgaatgctgttctcacaggtt |
241 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
28302890 |
ttaatttcagggcgttctcttactgaatgctgttctcacaggtt |
28302933 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University