View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6500_low_12 (Length: 208)
Name: NF6500_low_12
Description: NF6500
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6500_low_12 |
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Alignment Details
Target: chr4 (Bit Score: 174; Significance: 8e-94; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 174; E-Value: 8e-94
Query Start/End: Original strand, 9 - 190
Target Start/End: Original strand, 55070843 - 55071024
Alignment:
| Q |
9 |
gaagaatatattaattcctcattaagtctaatttctaatactaaaccatagttgtttccttagtcacatgcatcaataggttaaaactaatacatctttc |
108 |
Q |
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| T |
55070843 |
gaagaatatattaattcctcattaagtctaatttctaatactaaaccatagttgtttccttactcacatgcatcaataggttaaaactagtacatctttc |
55070942 |
T |
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| Q |
109 |
ttattaataggttctgccatctttgggagaaaagaaggatgaccttttgttgagagaactgcttagaagatagtcagattac |
190 |
Q |
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| T |
55070943 |
ttattaataggttctgccatctttgggagaaaagaaggatgaccttttgttgagagaactgcttagaagatagtcagattac |
55071024 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 105 - 168
Target Start/End: Complemental strand, 49701988 - 49701925
Alignment:
| Q |
105 |
tttcttattaataggttctgccatctttgggagaaaagaaggatgaccttttgttgagagaact |
168 |
Q |
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| T |
49701988 |
tttcttatcattaggttctgccatctttgagagaaaagaaagatgaacttttgttgagagaact |
49701925 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 105 - 184
Target Start/End: Complemental strand, 49532181 - 49532102
Alignment:
| Q |
105 |
tttcttattaataggttctgccatctttgggagaaaagaaggatgaccttttgttgagagaactgcttagaagatagtca |
184 |
Q |
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| T |
49532181 |
tttcttatcactaggttctgccatcgttgagaggaaagaaagatgaacttttgttgagagaactgctcggaagatggtca |
49532102 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 116 - 169
Target Start/End: Complemental strand, 49521174 - 49521121
Alignment:
| Q |
116 |
taggttctgccatctttgggagaaaagaaggatgaccttttgttgagagaactg |
169 |
Q |
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| T |
49521174 |
taggttctgccatcattgagaggaaagaaagatgaacttttgttgagagaactg |
49521121 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 105 - 184
Target Start/End: Complemental strand, 49485481 - 49485402
Alignment:
| Q |
105 |
tttcttattaataggttctgccatctttgggagaaaagaaggatgaccttttgttgagagaactgcttagaagatagtca |
184 |
Q |
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| T |
49485481 |
tttcttatcactaggttcttccatctttgagagaaaataaagatgaactcttgctgagagaactgctcataagatggtca |
49485402 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 105 - 190
Target Start/End: Original strand, 55066630 - 55066714
Alignment:
| Q |
105 |
tttcttattaataggttctgccatctttgggagaaaagaaggatgaccttttgttgagagaactgcttagaagatagtcagattac |
190 |
Q |
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| T |
55066630 |
tttcttattaataggt-cttccatctctgcaagaaaagcaagatgaacctttgttgagagaactgttcagaagatggtcaaattac |
55066714 |
T |
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