View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6500_low_4 (Length: 421)

Name: NF6500_low_4
Description: NF6500
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6500_low_4
NF6500_low_4
[»] chr4 (8 HSPs)
chr4 (120-404)||(28281004-28281288)
chr4 (121-386)||(28289133-28289398)
chr4 (277-404)||(28278249-28278375)
chr4 (121-220)||(28300076-28300175)
chr4 (122-216)||(28278406-28278500)
chr4 (13-58)||(28281350-28281395)
chr4 (275-312)||(28299987-28300024)
chr4 (22-58)||(28289458-28289494)
[»] chr7 (2 HSPs)
chr7 (125-381)||(24729224-24729483)
chr7 (13-55)||(24729553-24729595)
[»] chr3 (1 HSPs)
chr3 (120-304)||(28746916-28747100)


Alignment Details
Target: chr4 (Bit Score: 269; Significance: 1e-150; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 269; E-Value: 1e-150
Query Start/End: Original strand, 120 - 404
Target Start/End: Complemental strand, 28281288 - 28281004
Alignment:
Q  120 agaaatccacaaacctggccaaggatcaaagccttaacagaatgaaaaggagtagtgttaaaagcatcgaaaatcaaatgcggaggaggatatacagaat 219  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28281288 agaaatccacaaacctggccaaggatcacagccttaacagaatgaaaaggagtagtgttaaaagcatcgaaaatcaaatgcggaggaggatatacagaat 28281189  T
Q  220 ctttgaaagcaaaatactcatttccaacgaacatgcaaagagccagggcataagatttctgaaattcatcaggtaaagcttccaaccaagattgttccac 319  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||    
T  28281188 ctttgaaagcaaaatactcatttccaacgaacatgcaaagagccagggcgtacgatttctgaaattcatcaggtaaagcttccaaccaagattgttccac 28281089  T
Q  320 aagcatatcaggtagtttaatgcgacccgtaaccatagattctgataaagaaaatatgattagaaacaagagaaccggttatatt 404  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  28281088 aagcatatcaggtagtttaatgcgacccgtaaccatagattctgataaagaaaatatgattagaaacaagagaacctgttatatt 28281004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 170; E-Value: 4e-91
Query Start/End: Original strand, 121 - 386
Target Start/End: Complemental strand, 28289398 - 28289133
Alignment:
Q  121 gaaatccacaaacctggccaaggatcaaagccttaacagaatgaaaaggagtagtgttaaaagcatcgaaaatcaaatgcggaggaggatatacagaatc 220  Q
    |||||||||||||||||||||| |||| ||||||||| ||||||||||||||||| |||| ||||| |||||||||||||| |||||||||||| |||||    
T  28289398 gaaatccacaaacctggccaagaatcacagccttaacggaatgaaaaggagtagtattaagagcattgaaaatcaaatgcgaaggaggatatacggaatc 28289299  T
Q  221 tttgaaagcaaaatactcatttccaacgaacatgcaaagagccagggcataagatttctgaaattcatcaggtaaagcttccaaccaagattgttccaca 320  Q
    ||||||||| |||  |||||||   |||||||||||||||||| |||| |||| ||||||||||||| ||||||| ||||||||||||||||| || |||    
T  28289298 tttgaaagcgaaaatctcattttggacgaacatgcaaagagccggggcgtaaggtttctgaaattcaccaggtaatgcttccaaccaagattgctctaca 28289199  T
Q  321 agcatatcaggtagtttaatgcgacccgtaaccatagattctgataaagaaaatatgattagaaac 386  Q
    |||||||| ||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||    
T  28289198 agcatatccggtagtttaatgcgacctgtagccatagattctgataaagaaaatatgattagaaac 28289133  T

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Target: chr4; HSP #3
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 277 - 404
Target Start/End: Complemental strand, 28278375 - 28278249
Alignment:
Q  277 tctgaaattcatcaggtaaagcttccaaccaagattgttccacaagcatatcaggtagtttaatgcgacccgtaaccatagattctgataaagaaaatat 376  Q
    |||| |||||| |||||||| |||||||||||||||| ||||||||||||||   ||||||||||||||||||| | | ||||| |||||||| ||||||    
T  28278375 tctggaattcaccaggtaaaccttccaaccaagattgctccacaagcatatccattagtttaatgcgacccgtagctaaagattatgataaag-aaatat 28278277  T
Q  377 gattagaaacaagagaaccggttatatt 404  Q
     ||||||||| | |||||| ||||||||    
T  28278276 cattagaaacgaaagaacctgttatatt 28278249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 121 - 220
Target Start/End: Complemental strand, 28300175 - 28300076
Alignment:
Q  121 gaaatccacaaacctggccaaggatcaaagccttaacagaatgaaaaggagtagtgttaaaagcatcgaaaatcaaatgcggaggaggatatacagaatc 220  Q
    ||||||||||||||||||||||||||| | ||||| |||| |||||||| ||||| |||| ||||| |||||||||||||| ||||||||||||| ||||    
T  28300175 gaaatccacaaacctggccaaggatcacaaccttagcagattgaaaaggggtagtattaagagcattgaaaatcaaatgcgcaggaggatatacataatc 28300076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 122 - 216
Target Start/End: Complemental strand, 28278500 - 28278406
Alignment:
Q  122 aaatccacaaacctggccaaggatcaaagccttaacagaatgaaaaggagtagtgttaaaagcatcgaaaatcaaatgcggaggaggatatacag 216  Q
    ||||||||||||||||||||| |||| | ||||||||| ||||||||||||||| |||| ||||| ||||||||||||| ||||||||| |||||    
T  28278500 aaatccacaaacctggccaagaatcacaaccttaacaggatgaaaaggagtagtattaagagcattgaaaatcaaatgctgaggaggatttacag 28278406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 13 - 58
Target Start/End: Complemental strand, 28281395 - 28281350
Alignment:
Q  13 gagagtgatagccccattgcttgaccaggtccagaataaggttcct 58  Q
    |||| |||||||||||||||||||||||||||||||||||||||||    
T  28281395 gagaatgatagccccattgcttgaccaggtccagaataaggttcct 28281350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 275 - 312
Target Start/End: Complemental strand, 28300024 - 28299987
Alignment:
Q  275 tttctgaaattcatcaggtaaagcttccaaccaagatt 312  Q
    ||||||||||||| ||||||||||||||||||| ||||    
T  28300024 tttctgaaattcaccaggtaaagcttccaaccacgatt 28299987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 22 - 58
Target Start/End: Complemental strand, 28289494 - 28289458
Alignment:
Q  22 agccccattgcttgaccaggtccagaataaggttcct 58  Q
    ||||||||||||||||||||||||  |||||||||||    
T  28289494 agccccattgcttgaccaggtccatcataaggttcct 28289458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 143; Significance: 5e-75; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 143; E-Value: 5e-75
Query Start/End: Original strand, 125 - 381
Target Start/End: Complemental strand, 24729483 - 24729224
Alignment:
Q  125 tccacaaacctggccaaggatcaaagccttaacagaatgaaaaggagtagtgttaaaagcatcgaaaatcaaatgcggaggaggatatacagaatctttg 224  Q
    |||||||||||||| |||||||| | |||  |||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  24729483 tccacaaacctggcaaaggatcacaacctagacagaatgaaaaggagaagtgttaaaagcatcgaaaatcaaatgtggaggaggatatacagaatctttg 24729384  T
Q  225 aaagcaaaatactcatttccaacgaacatgcaaagagccagggca-taagatttctgaaat---tcatcaggtaaagcttccaaccaagattgttccaca 320  Q
    |||| |||| |||||||||  || ||||||||||||| ||||| | |||||||||||||||   |||||||| ||||||||||||||||||| |||||||    
T  24729383 aaagaaaaaaactcatttctgacaaacatgcaaagag-cagggaagtaagatttctgaaattcatcatcaggcaaagcttccaaccaagattattccaca 24729285  T
Q  321 agcatatcaggtagtttaatgcgacccgtaaccatagattctgataaagaaaatatgatta 381  Q
    |||||||||||||||||||||||||| |||   | ||| |||||||||||||| |||||||    
T  24729284 agcatatcaggtagtttaatgcgaccggtagttaaagaatctgataaagaaaaaatgatta 24729224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 13 - 55
Target Start/End: Complemental strand, 24729595 - 24729553
Alignment:
Q  13 gagagtgatagccccattgcttgaccaggtccagaataaggtt 55  Q
    |||| ||||||||||||||||| ||||||||||||||||||||    
T  24729595 gagaatgatagccccattgcttcaccaggtccagaataaggtt 24729553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 137; Significance: 2e-71; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 120 - 304
Target Start/End: Original strand, 28746916 - 28747100
Alignment:
Q  120 agaaatccacaaacctggccaaggatcaaagccttaacagaatgaaaaggagtagtgttaaaagcatcgaaaatcaaatgcggaggaggatatacagaat 219  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||| ||| ||||||||||||||||||||||||| ||||||||||||||||||||    
T  28746916 agaaatccacaaacctggccaaggatcacagccttaacagaatgaaaagcagtggtgttaaaagcatcgaaaatcaaatacggaggaggatatacagaat 28747015  T
Q  220 ctttgaaagcaaaatactcatttccaacgaacatgcaaagagccagggcataagatttctgaaattcatcaggtaaagcttccaa 304  Q
    |||||| |||||||||||||||||| | |||||||||||||||  |||| |||| ||||||||||||| ||||||||||||||||    
T  28747016 ctttgagagcaaaatactcatttccgatgaacatgcaaagagcaggggcgtaaggtttctgaaattcaccaggtaaagcttccaa 28747100  T

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