View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6500_low_5 (Length: 366)
Name: NF6500_low_5
Description: NF6500
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6500_low_5 |
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Alignment Details
Target: chr5 (Bit Score: 140; Significance: 3e-73; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 140; E-Value: 3e-73
Query Start/End: Original strand, 19 - 202
Target Start/End: Original strand, 31851774 - 31851956
Alignment:
| Q |
19 |
ggattgagaaaaatgactctcaattttgcatgattggccgtggtggattggaaacaacgcatcacatgttcctttctccgtttttgctcctttgtggagc |
118 |
Q |
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| T |
31851774 |
ggattgagaaaa-tgactctcaattttgcgtgattggccgcggtggattggacacaacgcatcacatgttcctttctccgtttttgctcctttgtggagc |
31851872 |
T |
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| Q |
119 |
attgtttggtcttggattgatatttcatcagctgatctggatttcttacaggatcattttattcagtttgtttagtctttcggt |
202 |
Q |
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| T |
31851873 |
atggttaggtcttgggttgatatttcatcagctgatccggatttcttacaggatcatcttgttcagtttgtttagtctttcggt |
31851956 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 217 - 289
Target Start/End: Original strand, 31853379 - 31853451
Alignment:
| Q |
217 |
tcaaaataattactacttgagcaagggttcaaatcaaagaaagaaaaagttgcaccatttaaaacacacttaa |
289 |
Q |
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| T |
31853379 |
tcaaaataattactacttgagcaagggttcaaatcaaagaaagaaaaagttgcaccatttaaaacacaattaa |
31853451 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 248 - 289
Target Start/End: Original strand, 31851362 - 31851404
Alignment:
| Q |
248 |
aatcaaagaaa-gaaaaagttgcaccatttaaaacacacttaa |
289 |
Q |
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| T |
31851362 |
aatcaaagaaaagaaaaagttgcaccatataaaacacacttaa |
31851404 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 64; Significance: 7e-28; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 31 - 187
Target Start/End: Complemental strand, 18187134 - 18186974
Alignment:
| Q |
31 |
atgactctcaattttgcatgattggccgtggtggattggaaacaacgcatcacatgttcctttct----ccgtttttgctcctttgtggagcattgtttg |
126 |
Q |
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| T |
18187134 |
atgactctcaattttgtgtgactggttgcggtggattggaaacaacgcatcacttgttcctttctttccccgttttcgcccctttgtggagcatagttag |
18187035 |
T |
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| Q |
127 |
gtcttggattgatatttcatcagctgatctggatttcttacaggatcattttattcagttt |
187 |
Q |
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| T |
18187034 |
gtcttggattggtatatcttcagctaatccgtattccttacaggatcatcttgttcagttt |
18186974 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 44; Significance: 6e-16; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 31 - 187
Target Start/End: Original strand, 24838221 - 24838381
Alignment:
| Q |
31 |
atgactctcaattttgcatgattggccgtggtggattggaaacaacgcatcacatgttcctttct----ccgtttttgctcctttgtggagcattgtttg |
126 |
Q |
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| T |
24838221 |
atgactctcaattttgtgtgactggctgcggtggattggaaatagcacatcacttgtttcattcttgccctgttttcgcccctttttggtgcatggttag |
24838320 |
T |
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| Q |
127 |
gtcttggattgatatttcatcagctgatctggatttcttacaggatcattttattcagttt |
187 |
Q |
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| T |
24838321 |
gtcgtggattggtatatcttcagctgatctggatttgttacaggatcatcttgttcagttt |
24838381 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 60 - 187
Target Start/End: Complemental strand, 15143292 - 15143161
Alignment:
| Q |
60 |
ggtggattggaaacaacgcatcacatgttcctttct----ccgtttttgctcctttgtggagcattgtttggtcttggattgatatttcatcagctgatc |
155 |
Q |
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| T |
15143292 |
ggtggagtggaaacaacacatcacttgttcctttcttgccccgctttcgcccctttgtggagcatggatagatcttggattggtatattattagctgatc |
15143193 |
T |
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| Q |
156 |
tggatttcttacaggatcattttattcagttt |
187 |
Q |
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| T |
15143192 |
cagattccttacaggatcatcttgttcagttt |
15143161 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 31 - 95
Target Start/End: Complemental strand, 9282618 - 9282554
Alignment:
| Q |
31 |
atgactctcaattttgcatgattggccgtggtggattggaaacaacgcatcacatgttcctttct |
95 |
Q |
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| T |
9282618 |
atgactctcaattttgtgtgactggatgcggtggattggaaacaactcatcacttgttcctttct |
9282554 |
T |
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