View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6500_low_6 (Length: 334)
Name: NF6500_low_6
Description: NF6500
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6500_low_6 |
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Alignment Details
Target: chr8 (Bit Score: 304; Significance: 1e-171; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 304; E-Value: 1e-171
Query Start/End: Original strand, 1 - 316
Target Start/End: Complemental strand, 37957946 - 37957631
Alignment:
| Q |
1 |
ggcatgggagggacaggcaaaacaacaattgccagtgcaatctatcataaactcgcaactcagttcagttccagaagcatcgttctaaatgtgaaacaag |
100 |
Q |
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| T |
37957946 |
ggcatgggagggacaggcaaaacaacaattgccagtgcaatctatcataaactcgcaactcagttcagttccagaagcatcgttctaaatgtgaaacaag |
37957847 |
T |
|
| Q |
101 |
aaatagaaagagctggactagaccatgtacgaagaaaatacttatcagaacttctagatgaagacattacatcctctaaatccaatttttcatttgatcc |
200 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37957846 |
aaatcgaaagagctggactagaccatgtacgaagaaaatacttatcagaacttctagatgaagacattacatcctctaaatccaatttttcatttgatcc |
37957747 |
T |
|
| Q |
201 |
aaggctcaaacggacaaagattctccttgttcttgatgatgtgaaagattctgatcaacttgaagatttaattggaacacatcatagtaactttggccaa |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37957746 |
aaggctcaaacggacaaagattctccttgttcttgatgatgtgaaagattctgatcaacttgaagatttaattggaacacatcatagtaactttggccaa |
37957647 |
T |
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| Q |
301 |
gggagtataatcattg |
316 |
Q |
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||||||| || ||||| |
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| T |
37957646 |
gggagtagaaccattg |
37957631 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 143; E-Value: 4e-75
Query Start/End: Original strand, 1 - 275
Target Start/End: Original strand, 37929641 - 37929915
Alignment:
| Q |
1 |
ggcatgggagggacaggcaaaacaacaattgccagtgcaatctatcataaactcgcaactcagttcagttccagaagcatcgttctaaatgtgaaacaag |
100 |
Q |
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||||||||||||| |||||||||||||||||||| ||||||||||||| || || |||||||||||||||||| ||||||| ||||||||| |||||| |
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| T |
37929641 |
ggcatgggagggataggcaaaacaacaattgccaatgcaatctatcatcaattctcaactcagttcagttccaaaagcatcattctaaatgctcaacaag |
37929740 |
T |
|
| Q |
101 |
aaatagaaagagctggactagaccatgtacgaagaaaatacttatcagaacttctagatgaagacattacatcctctaaatccaatttttcatttgatcc |
200 |
Q |
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|||||||||||||||||||| |||||||| |||||||||||||||| |||||||||| |||||||||||||||||| || ||| ||||||| ||| |
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| T |
37929741 |
aaatagaaagagctggactacgccatgtacaaagaaaatacttatcacaacttctagaggaagacattacatcctctggattcaagttttcatacattcc |
37929840 |
T |
|
| Q |
201 |
aaggctcaaacggacaaagattctccttgttcttgatgatgtgaaagattctgatcaacttgaagatttaattgg |
275 |
Q |
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|||||| |||| |||| ||||||||||||||||||| ||||| ||||| ||||||||||||| ||||||||| |
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| T |
37929841 |
aaggcttcaacgaggaaaggttctccttgttcttgatgacgtgaacgattcagatcaacttgaaggtttaattgg |
37929915 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 4 - 277
Target Start/End: Complemental strand, 44644756 - 44644483
Alignment:
| Q |
4 |
atgggagggacaggcaaaacaacaattgccagtgcaatctatcataaactcgcaactcagttcagttccagaagcatcgttctaaatgtgaaacaagaaa |
103 |
Q |
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|||||||| | ||| |||||||||||||| |||||||| |||| ||| | ||||| || ||||||| | |||||| | |||||||| ||||||||| |
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| T |
44644756 |
atgggaggaatagggaaaacaacaattgctagtgcaatatatcgcaaattggcaacccaattcagttttaacagcatcatcctaaatgttcaacaagaaa |
44644657 |
T |
|
| Q |
104 |
tagaaagagctggactagaccatgtacgaagaaaatacttatcagaacttctagatgaagacattacatcctctaaatccaatttttcatttgatccaag |
203 |
Q |
| |
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|||| ||| |||||| ||||| ||| ||| ||||| || || ||||| | ||| ||| ||||||||| || | |||||||||||| ||| |
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| T |
44644656 |
tagagagatttggactgcaccatatacaaagcaaatatagatttgagcttctgggagaaaacaacacatcctctggattatgtctttcatttgatcaaag |
44644557 |
T |
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| Q |
204 |
gctcaaacggacaaagattctccttgttcttgatgatgtgaaagattctgatcaacttgaagatttaattggaa |
277 |
Q |
| |
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||||||| |||| ||| ||||||||||||||||||||| || |||| ||||||||| |||||||||||||| |
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| T |
44644556 |
gctcaaatggactaaggctctccttgttcttgatgatgttaacaattcggatcaacttagagatttaattggaa |
44644483 |
T |
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