View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6500_low_8 (Length: 260)
Name: NF6500_low_8
Description: NF6500
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6500_low_8 |
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Alignment Details
Target: chr1 (Bit Score: 226; Significance: 1e-124; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 1 - 245
Target Start/End: Complemental strand, 48951464 - 48951222
Alignment:
| Q |
1 |
tggtatttgggcttgtttttctcaaggagaaggtaggtggtacaataccaaaataacaatattctattttgcgctagcagtgtatccctaattgtacttt |
100 |
Q |
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| T |
48951464 |
tggtatttgggcttgtttttctcaaggagaaggtaggtggtacaataccaaaataacaatattctattttgcgctagcagtgtatccctaattgtacttt |
48951365 |
T |
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| Q |
101 |
ttccaaaggaaagacgttctagtgcctgtgaaatagagaaaaggacaagcaagtgaaacagatcagcattcaagaaagcaagcccaattaaacaaccaat |
200 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
48951364 |
ttccaaaggaaagacgttctagtgcctgcgaaatagagaaaaggacaagcaagtgaaacagatcagcattcaagaaagcacgcccaattaaacaaccaat |
48951265 |
T |
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| Q |
201 |
cttatattatccaagaaacattgacggtgtatatcatagttttat |
245 |
Q |
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| T |
48951264 |
cttatattatccaagaaacattgacg--gtatatcatagttttat |
48951222 |
T |
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